projeto estratégico relatório científico final · 2016. 12. 16. · projeto estratégico...

Centro de Investigação Marinha e Ambiental |UNIVERSIDADE DO ALGARVE | Unidade de I&D350

2013

Projeto Estratégico Relatório Científico Final


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1. Identificação do Projecto Referência do Projecto: PEst-OE/MAR/UI0350/2011

Investigador Responsável: Tomasz Boski

Instituição Proponente: Universidade do Algarve (UAlg)

Data de Início: 01-01-2011 Data de Fim: 31-12-2013 Financiamento Concedido: €196.031,00

2. Caracterização Sumária do Projecto/ Objectivos do Projecto (indicar endereço electrónico do(s) site(s) criado(s), quando aplicável)

The project PEst-OE/MAR/UI0350/2011 had an integrating strategic aim which was defined as Factors, Dynamics and Models of the Phenomena in Marine, Coastal, Watershed Systems and Biotecnological. It was a 3 year multidisciplinary initiative embracing several aspects of the Marine and Environmental science whose overall aims were following: i) to create new knowledge – mostly delivered in form of peer reviewed papers ii) to train individuals to a high-quality, professional standard - iii) to develop new research tools and technologies in the field of Marine and Environmental Science that will later be made available to the wider community in form of monitoring programs and expert assessment and iv) to produce digital applications as territorial management and education support tools. These aims were accommodated within 4 principal research objectives (RO´s) which are further detailed and through the integrative research Centre at Integrated Coastal Zone Management technically attributed to objective 3.

Breve descrição das actividades desenvolvidas bem como dos desvios ocorridos durante a

execução do projecto In functional terms the project acted as an integrator between a series of specific initiatives financed from

other sources, and at the same time to enhance the pluridisciplinarity of the unit. These initiatives were

carried out within 4 processes oriented Research Objectives, RO´s with 15 associated tasks and the most

relevant activities are listed below:

RESEARCH OBJETIVE I: MARINE PROCESSES

a) Models and measurements of transfer phenomena in the ocean

Remote Sensing of Ocean Colour off the Iberian shelf and sea-truthing of ESA-MERIS products

Development of new methodologies of operational modelling considering coastal dynamics, waves and oil spills for the southern Portugal and atmospheric models.

Development of graphical computing, GIS tools and of 3D educational tools (FCT Project: PTDC/AAC-CLI/100916/2008).


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Model development to predict abiotic habitat conditions and biota in rivers for application in climate change research and water management (European project IMPACT), through an ecohydrological approach.

b) Chemical dynamics in the ocean

Characterization of oceanographic processes and estimation of cross-shore exchanges of nutrients, suspended solids and chlorophyll a in the Ria Formosa lagoon (COALA Project: PTDC/MAR/114217/2009).

c) Marine microbial dynamics and foodwebs

Assessment of phytoplankton and bacteria bottom-down control in Ria Formosa (PHYTORIA project: PTDC/MAR/114380/2009). Evaluate phytoplankton’s trend variability off southern Portugal (PHYTOCLIMA project. PTDC/AAC-CLI/ 114512/2009).

RESEARCH OBJETIVE II: MARINE MORPHOSEDIMENTARY PROCESSES

a) Geochemical and organic maturation studies of the Carboniferous South Portuguese Zone (SPZ) and the Mesozoic Algarve Basin (AB). In the SPZ a comprehensive geochemical study of its clastic lithologies was completed, to determine sediments’ provenance and geological evolution. In the AB a comprehensive study of its organic maturation was completed. Studies of Apatite Fission Track analysis were done to assess its tectonic uplift and erosion phases.

b) Studies on the karst caves of the Algarve and its speoleothem deposits were done to assess Quaternary climate changes in the Algarve.

c) Understand palaeoenvironmental changes at different time-scales related to climatic and sea-level changes and anthropogenic impacts in two South Iberian continental platforms: North Cadiz and North Alboran platforms.

d) Geological studies of the Holocene evolution of the Ria Formosa, chiefly the reconstruction of the sea-level curve and the evolution of the landscape.

RESEARCH OBJETIVE III: LARGE SCALE GEOLOGICAL PROCESSES AND THEIR LOCAL

RECORD

a) Erosion, overwash and overtopping were quantified over barrier islands, coastal structures and inside an experimental flume. These studies were used to assess coastal vulnerability.

b) A combined study of hydrographic measurements with numerical modeling was undertaken to evaluate the potential tidal energy extraction and new methodologies were implemented for environmental monitoring offshore marine renewable energy projects.

c) Storm-driven morphological changes in embayed beaches exposed to high-energy conditions in three wave climates (NW Ireland, SW Portugal and Eastern South Africa) were compared.

d) Data was analyzed for the understanding of hydrodynamics at Guadiana estuary. e) Field data and remote sensing data were analyzed to determine short-term cliff retreat in

hazardous areas. f) The role of both the continental shelf and coastline physiography on the wave and littoral

currents transformation were quantified using field data g) Numerical models based on field data were used to assess wave and currents transformation on

several geographical and temporal scales,


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h) Field data and numerical modeling were combined to produce coastal management tools.

RESEARCH OBJETIVE IV: IMPACTS OF THE ENVIRONMENTAL CHANGES

A) the degree of prenatal exposure to environmental polluting agents and their impact during gestation to birth.

B) the impact of emerging contaminants (quantum dots, zero-valent iron, CuO and Ag nanoparticles; pharmaceutical ingredients (NSAIDS and SSRIS)) and synthetic progestagens in mussels

C) the impact of lagoon characteristics, processes and eutrophication. D) the impact of hazardous substances in water quality of Alqueva. E) the ecological criteria of streams and reservoirs to unveil their relation to toxic CyanoHABs

development F) the influence of ecological factors on seafood quality, with emphasis on biogeochemical

processes controlling nutrient availability for food webs. G) the use of organic wastes as soil amendments. H) ecotoxicological and human risks of the exposure to mining soils. I) assessment of capacity of a strain of Coccomyxa sp. (VAL007), isolated from the acid mine

drainage of S. Domingos, to accumulate metabolites of interest. J) molecular characterization of grapevine fanleaf (GFLV) and leafroll (GLRaV-1 and -3) K) development of renewable biofuels of 2nd and 3rd generation from agro industrial

There were no significant deviations from the research plan in each RO.

Objectivos atingidos

During the 2011-2013 triennium CIMA team published more than 200 international peer reviewed papers and approached 2 articles per integrated member per year goal. Thematically these achievements can be summarized as follows:

RESEARCH OBJETIVE I: MARINE PROCESSES

a) Validation of MERIS Marine Products off the coast of Sagres. Over 300 “match-ups” between satellite and in situ data. Development of algorithms for ocean colour remote sensing

b) Global carbon balances for Ria Formosa. For the Algarve Coast: a) calibration of the hydrodynamic model, b) calibration of the wave model and realistic results of the oil spill dispersion model. Development of the atmospheric models based on surface drag force (trapped lee waves and upward propagating waves in non-hydrostatic stratified flow over a 2D ridge).

c) Development of graphical computing, GIS tools in 3D Subsurfacecave morphology mapping and 3D educational tools.

d) Implementation of a monitoring program in the Guadiana estuary. e) Quantification of the water, nutrients, chlorophyll a and SS exchanges across the main inlets of

the Ria Formosa. f) Bottom-down control of protist grazing and viral lysis on both phytoplankton and bacteria in the

Ria Formosa. Phytoplankton variability as a sentinel of climate change off the southern coast of Portugal.


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RESEARCH OBJETIVE II: MARINE MORPHOSEDIMENTARY PROCESSES

a) Production of a digital application for scientific, management and education support tools dealing with caves’ information and studies of climate/environment change http://193.136.227.170/sipclip_website/index.php.

b) Geochemical characterization of the Carboniferous Flysch deposits of the South Portuguese Zone and its geological implications in the evolution of the Variscan Orogen.

c) Characterization of the burial thermal history of the Meso-Cenozoic Algarve Basin and its implications for hydrocarbons source rock studies and exploration.

d) First account on the unconventional hydrocarbon source rock potential of the Lower Permian black shales in the Moatize Basin, Lower Karoo, Tete Province, Mozambique.

e) Identification of benthic foraminifera as palaeoenvironmental indicators of the last 15000 years and its relations with the Guadiana River flow.

f) Reconstruction of the Holocene history of Ria Formosa lagoon, including the DTM model of the pre-inundation surface (90% concluded) and the local sea-level curve for the last 10 ka.

RESEARCH OBJETIVE III: LARGE SCALE GEOLOGICAL PROCESSES AND THEIR LOCAL

RECORD

i) Identification of main factors affecting water circulation dynamics at the Guadiana Estuary. j) Characterization of storm impacts, particularly overwash, overtopping and cliff erosion, in natural

and artificial environments, including detailed measurements of hydrodynamic and morphologic variables.

k) Characterization of geologic control on beach morphodynamics and management l) Development of WebGIS tools for tidal inlets and beach dynamics m) Identification of several coastal erosion problems and existing management approaches in

several coastal environments, within the European context and the Iberian-American context. n) Characterization of the influence of coastal processes on inner shelf sediment distribution. o) The energy of each type of waves quarrying the base of the cliffs was quantified. p) Combining the Side Scan Sonar images with textural properties of the sediment made possible

the interpretative cartography of seabed forms and associated currents. q) A report concerning environmental variables in the Atlantic Iberian Margin was presented

pointing potential preservation of underwater landscapes and archaeological remains.

RESEARCH OBJETIVE IV: IMPACTS OF THE ENVIRONMENTAL CHANGES

a) Assessment of metals and organic contaminants effects in newborn children, whose mothers live

in areas with distinct environmental susceptibilities using umbilical cord blood collected during birth.

b) The physical characterization and accumulation of nanoparticles as well as genotoxic, immunotoxic and changes in protein patterns in mussel tissues

c) Alterations of gene and protein expression in bivalves exposed to pharmaceutical compounds

http://193.136.227.170/sipclip_website/index.php


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d) Delay in maturation observed in mussels males compared to females exposed to progestagens affecting the AD metabolism

e) Analysis of physiography and hydrology of European coastal lagoons f) Identification of the most polluted pesticides and metals sediments in Alqueva along with the

most sensitive species with potential ecological risk g) Development of novel antibodies specific for detection of GLRaV-1, based on an aminoacid

consensus sequence found in the capsid protein. h) Detection and molecular characterization for the first time in Portuguese grapevine varieties, of

co-infection by GFLV strains causing malformation and extreme chlorosis i) Optimization of growth conditions for accumulation of carotenoids and chlorophyll b by

Coccomyxa sp. j) Leachates of some organic wastes applied on land can be toxic to some organisms; k) soils ecotoxicology emphasize the risk of Zn entering human food chain via consumption of

vegetables produced around mining areas. l) Design of bioethanol production sustainable process, using carob pulp industrial wastes m) Establishment of fermentation technological conditions, at very high hydrocarbon conversion n) Establishment of oleaginous yeast and microalgae cultures at high lipid content, performed at

biological reactor, using industrial wastes suitable for biodiesel o) Capacity building of 9 PhDs and 11 MScs p) Organization of an International Conference (PRIMO17) and presentation of results at

international fora and publication in ISI journals and books

3. Instituições que Participam no Projecto Universidade do Algarve (UAlg) Designação Nº Pessoas Mês: 38

4. Equipa de Investigação (31-12-2012) Equipa a data de 31-12-2012

Anexo ficheiro: CIMA_Unidade0350_POE_4.Equipa de Investigação_31.12.2012.pdf


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5. Indicadores de Realização Física

Indicadores Quantidade realizada

A - Publicações

Livros 13

Artigos em revistas internacionais 62

Artigos em revistas nacionais 1

B - Comunicações

Comunicações em encontros científicos internacionais 82

Comunicações em encontros científicos nacionais 17

C - Relatórios 5

D - Organização de seminários e conferências 13

E - Formação avançada

Teses de Doutoramento 8

Teses de Mestrado 16

Outras 10

F - Modelos 5

G - Aplicações computacionais 2

H - Instalações piloto 0

I - Protótipos laboratoriais 0

J - Patentes 1

L - Outros


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6. Publicações

A - Publicações

Livros (13)

1. Araújo F, Dias JMA (2013) Avaliação de impactes antrópicos na zona costeira Portuguesa. In: MAC Rodrignes MAC, Pereira SD, Bergarnaschi S (Eds.). Interações Homem - Meio nas zonas costeiras: Brasil / Portugal. Rio de Janeiro. Corbã. pp. 43-53.

2. Bebianno MJ, Vale C (2013) Terá Portugal capacidade de implementar uma estratégia integrada para cumprir a Directiva Europeia da Estratégia Marinha?. Universidade do Algarve. Mar Português, conhecimento, valorização e desenvolvimento. Ed. Faro: Universidade do Algarve. pp. 100-104.

3. Correa I, Alcantara-Carrio J, Lacambra L, Ferreira Ó (2013) Introducción a los riesgos naturales en el litoral. . In: Williams A, Pranzini E (Eds.). II Manual de Métodos en Teledetección Aplicada a la Prevención de Riesgos Naturales en el Litoral. Manuales CYTED. pp.9-41.

4. Ferreira Ó, Matias A (2013) The Portuguese coastal zone: characteristics, erosion and protection,, pp. 275-293. ISBN: 978-1-84971-339-9. URL: http://www.routledge.com/books/details/9781849713399/

5. Freitas JG, Dias JÁ (2013) O caso de Espinho (Portugal): Um exemplo das consequências das acções antrópicas nas zonas costeiras. In: Rodrignes MAC, Pereira SD, Bergarnaschi S (Eds.). Interações Homem - Meio nas zonas costeiras. Brasil/Portugal. Rio de Janero. Corbã. pp. 123-136.

6. Isla F, Montoya I, Ferreira Ó (2013) Estudios de erosión de costas rocosas. In: Alcantara-Carrió J, Montoya-Montes I, Correa-Arango I (eds). II Manual de Métodos en Teledetección Aplicada a la Prevención de Riesgos Naturales en el Litoral. Manuales CYTED. pp. 341-365.

7. Martins V, Alveirinho Dias JM, Laut LLM, Silva F, Miranda P, Rubio B, Fernández-Fernández S, Bernabeu A, Rey D, Ferreira B, Renó R, Yamashita C, Clemente I, Laut VM, Rodrigues MA, Frontralini F, Mendonça- Filho JG, Bernardes C, Rocha F (2013) Distribuição de elementos traço e avaliação de risco de toxicidade de sedimentos da Laguna de Aveiro (NW Portugal). In: Rodrignes MAC, Pereira SD, Bergarnaschi S (Eds). Interações Homem - Meio nas zonas costeiras. Brasil/Portugal. Rio de Janeiro. Corbã. pp. 103-119.

8. Morais P, Martins F, Chícharo MA, Lopes J, Chícharo L (2013) MOHID as a tool to evaluate the impact of water discharge from dams on the advection of estuarine fish larval stages. In: Mateus M, Neves R (Eds.) Ocean modelling for coastal management – Cases studies with MOHID. IST Press. Lisbon. pp 143-160. http://mohidmodel.wix.com/oceanmodelling2013#!chapter11/c1hx8

9. Terrinha P, Rocha, RB, Rey J, Cachão M, Moura D, Roque C, Martins L, Valadares V, Cabral J, Azevedo MR, Barbero L, Clavijo E, Dias RP, Matias H, Matias L, Madeira J, Silva CM, Munhá JR, Rebelo L, Ribeiro C, Vicente J, Noiva J, Youb N, Bensalah MK (2013) A Bacia do Algarve: Estratigrafia, Paleogeografia e Tectónica. Volume II- Geologia Meso-Cenozóica de Portugal. In: Dias R, Araújo A, Terrinha P, Kullberg JC (Eds.). Geologia de Portugal. Escolar Editora. ISBN: 978-972-592-364-1. pp. 29-166.

10. Vale C, Bebianno MJ (2013) Pressões antropogénicas na zona costeira: Desafios de uma investigação orientada para indicadores do bom estado ambiental. Universidade do Algarve. Mar

http://www.routledge.com/books/details/9781849713399/

http://mohidmodel.wix.com/oceanmodelling2013#!chapter11/c1hx8


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Português, conhecimento, valorização e desenvolvimento. Ed Faro. Universidade do Algarve. pp. 59-63.

11. Veiga-Pires C (2013) Criar Ciência. In: Paulo D, Oliveira LF, Tavares M, Bernardes JP, Parreira R (Eds.), Quintas de cultura. A criação cultural no Algarve. Universidade do Algarve & Direção Regional de Cultura do Algarve. pp. 45–60. http://hdl.handle.net/10400.1/2779

12. Wolanski E, Newton A, Rabalais N, Legrand C (2013) Coastal zone management. Scott Elias (Editor-in-Chief), Ecological Engineering, Encyclopedia of Ecology. Ed. Oxford: Elsevier. ISBN: 978-0-08-045405-4http://www.sciencedirect.com/science/article/pii/B978008045405400046X

13. Yakushev EV, Newton A (2013) Introduction: Redox Interfaces in Marine Waters. Chemical Structure of Pelagic Redox Interfaces, Observation and Modelling. The Handbook of Environmental Chemistry. Ed. SpringerLink, vol. 22, pp. 1-12. http://link.springer.com/chapter/10.1007/698_2012_167

Artigos em revistas internacionais (62)

1. Almeida C, Pereira CG, Gomes T, Cardoso C, Bebianno MJ, Cravo A (2013) Genotoxicity in two bivalve species from a coastal lagoon in the south of Portugal. Marine Environmental Research 89: 29-38. http://www.sciencedirect.com/science/article/pii/S014111361300072X

2. Alvarenga P, Laneiro C, Palma P, Varennes A, Cunha-Queda C (2013) A study on As, Cu, Pb and Zn (bio)availability in an abandoned mine area (São Domingos, Portugal) using chemical and ecotoxicological tools. Environmental Science and Pollution Research 20: 6539-6550. http://link.springer.com/article/10.1007/s11356-013-1649-2

3. Barros P, Sobral P, Range P, Chícharo L, Matias D (2013) Effects of sea-water acidification on fertilization and larval development of the oyster Crassostrea gigas. Journal of Experimental Marine Biology and Ecology 440:200–206. http://www.sciencedirect.com/science/article/pii/S0022098113000038

4. Bastos R, Vidal A, Azeiteiro UM, Dias JÁ (2013) Fish distribution in fauna data in Lagoon of Aveiro (North Portugal): a comparative analysis between 1758 and the Present. An Interdisciplinary Case Study. Marine Biodiversity: international Journal of Marine Science 3: 219-224. http://bio.sophiapublisher.com/index.php/ijms/article/view/844

5. Cardeira S, Rita F, Relvas P, Cravo A (2013) Chlorophyll a and chemical signatures during an upwelling event off the South Portuguese Coast (SW Iberia). Cont. Shelf Res 5 133–149. http://www.sciencedirect.com/science/article/pii/S0278434312003202

6. Carrasco AR, Ferreira Ó, Matias A (2013) Managing flood risk in fetch-limited environments: what can be done? Journal of Coastal Research, SI 65, 892-897. http://ics2013.org/papers/Paper3939_rev.pdf

7. Carrasco AR, Ferreira Ó, Matias A, Freire P, Bertin X, Dias JA (2013) Sediment transport measurements with tracers on very low-energy beaches. Earth Surface Processes and Landforms, 38, 561-569. http://dx.doi.org/10.1002/esp.3300

8. Carvalho LF, Rocha C, Fleming A, Veiga-Pires C, Anibal J (2013) Interception of nutrient rich Submarine Groundwater Discharge seepage on European temperate beaches by the acoel flatworm, Symsagittifera roscoffensis. Marine Pollution Bulletin 75: 150-156. doi: 10.1016/j.marpolbul.2013.07. http://www.sciencedirect.com/science/article/pii/S0025326X13004323

http://hdl.handle.net/10400.1/2779

http://www.sciencedirect.com/science/article/pii/B978008045405400046X

http://link.springer.com/chapter/10.1007/698_2012_167

http://www.sciencedirect.com/science/article/pii/S014111361300072X

http://link.springer.com/article/10.1007/s11356-013-1649-2

http://www.sciencedirect.com/science/article/pii/S0022098113000038

http://bio.sophiapublisher.com/index.php/ijms/article/view/844


http://ics2013.org/papers/Paper3939_rev.pdf

http://dx.doi.org/10.1002/esp.3300

http://www.sciencedirect.com/science/article/pii/S0025326X13004323


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9. Cearreta A, Mahiques M, Dias JA (2013) Record of anthropogenic activities on the coastal environments of Iberoamerica (Antropicosta). Ocean and Coastal Management 77: 1-2. http://www.sciencedirect.com/science/article/pii/S0964569112001913.

10. Chícharo MA, Cruz J, Ben‐Hamadou R, Chícharo L (2013) Zooplankton of the Bay of Biscay and western Iberian Shelf. Guadiana estuary (Site 55). ICES Zooplankton status report 2010/2011. ICES Cooperative Research Report 318: 156-160.

11. Cravo A, Cardeira S, Pereira C, Rosa M, Madureira M, Rita F, Luís J, Jacob J (2013). Nutrients and particulate matter exchanges through the Ria Formosa coastal lagoon, Portugal. Journal of Coastal Research 65: 1999-2004. http://ics2013.org/papers/Paper4004_rev.pdf

12. Cravo A, Lopes B, Serafim A, Company R, Barreira L, Gomes T, Bebianno MJ (2013) Spatial and seasonal biomarker responses in the clam Ruditapes decussatus. Biomarkers 18: 30-43. http://informahealthcare.com/doi/abs/10.3109/1354750X.2012.730549

13. Cravo A, Relvas P, Cardeira S, Rita F (2013). Nutrients and chlorophyll a transports during an upwelling event in the NW margin of the Gulf of Cadiz. Journal of Marine Systems 128: 208-221. http://www.sciencedirect.com/science/article/pii/S0924796313001176

14. Dias JA, Cearreta A, Isla FI, de Mahiques MM (2013) Anthropogenic impacts on Iberoamerican coastal areas: Historical processes, present challenges, and consequences for coastal zone management. Ocean and Coastal Management 77: 80-88. http://www.sciencedirect.com/science/article/pii/S0964569112001949

15. Domingues RB, Barbosa AB, Galvão HM. Re: Brito, A.C., Brotas, V., Caetano, M., Coutinho, T.P., Bordalo, A.A., Icely, J., Neto, J.M., Serôdio, J., Moita, T. (2013) “Defining phytoplankton class boundaries in Portuguese transitional waters: an evaluation of the ecological quality status according to the Water Framework Directive” [Ecological Indicators 19, 5-14]. Ecological Indicators 24 254-255. http://www.sciencedirect.com/science/article/pii/S1470160X12002609

16. Encarnação J, Leitão F, Range P, Piló D, Chícharo MA, Chícharo L (2013) The influence of submarine groundwater discharges on subtidal meiofauna assemblages in south Portugal (Algarve). Estuarine and Coastal Shelf Science 130 202-208. http://www.sciencedirect.com/science/article/pii/S0272771413001996

17. Encarnação J, Leitão T, Morais P, Piló D, Range P, Chícharo L, Chícharo MA (2013) Effects of inter-annual freshwater inflow shifts on the community structure of estuarine decapods. Cahiers de Biologie Marine 54: 181-189. http://www.sb-roscoff.fr/cbm/article.htm?execution=e20s1

18. Esteves F, Teixeira Santos M, Eiras-Dias JE, Fonseca F (2013) Molecular data mining to improve antibody-based detection of Grapevine leafroll-associated virus 1 (GLRaV-1). Journal of Virological Methods 194: 258–270. http://www.sciencedirect.com/science/article/pii/S0166093413003911

19. Fernandes D, Dimastrogiovanni G, Anto M, Blázquez M, Porte C (2013) Metabolism of the polycyclic musk galaxolide and its interference with endogenous and xenobiotic metabolizing enzymes in the Sea Bass (Dicentrarchus labrax). Environmental Pollution 174: 214-221. http://www.sciencedirect.com/science/article/pii/S0269749112005118

20. Fernandes D, Porte C (2013) Hydroxylated PAHs alter the synthesis of androgens and estrogens in subcellular fractions of carp gonads. Science of the Total Environment 447: 152-159. http://www.sciencedirect.com/science/article/pii/S0048969712016257

21. Fernandes P, Rodrigues B, Borges M, Matos V, Clayton G (2013) Organic maturation of the Algarve Basin (southern Portugal) and its bearing on thermal history and hydrocarbon exploration. Marine and Petroleum Geology 46: 210-233. http://www.sciencedirect.com/science/article/pii/S0264817213001670



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22. Font E, Veiga-Pires C, Pozo M, Nave S, Costas S, Ruiz Muñoz F, Abad M, Simões N, Duarte S, Rodríguez-Vidal J (2013) Benchmarks and sediment source(s) of the 1755 Lisbon tsunami deposit at Boca do Rio Estuary. Marine Geology 343: 1-14. http://www.sciencedirect.com/science/article/pii/S0025322713001205

23. Freitas JG, Dias JA (2013) 1941 windstorm effects on the Portuguese Coast. What lessons for the future? Journal of Coastal Research 65: 714-719. http://ics2013.org/papers/Paper4016_rev.pdf

24. Frias P, Horta J, Almeida LP, Pacheco A, Ferreira Ó (2013) Development of a WebGIS tool to determine tidal inlet evolution. Journal of Coastal Research 65: 1379-1384. http://ics2013.org/papers/Paper4318_rev.pdf

25. Garel E, Ferreira Ó (2013) Fortnightly changes in water transport direction across the mouth of a narrow estuary. Estuaries and Coasts 36: 286-299. http://link.springer.com/article/10.1007/s12237-012-9566-z

26. Genç IY, Esteves E, Aníbal J, Diler A (2013) Effects of chilled storage on quality of vacuum packed meagre fillets. Journal of Food Engineering 115: 486-494. http://www.sciencedirect.com/science/article/pii/S0260877412004335

27. Goela PC, Icely J, Cristina S, Newton A, Moore G, Cordeiro C (2013) Specific absorption coefficient of phytoplankton off the Southwest coast of the Iberian Peninsula: A contribution to algorithm development for ocean colour remote sensing. Continental Shelf Research 52: 119-132. http://www.sciencedirect.com/science/article/pii/S0278434312003184

28. Gomes A, Witkowski A, Dabek P, Boski T, Moura D, Szkornik K, Kurzydlowski K (2013) Syvertsenia iberica (Cymatosiraceae): a new estuarine diatom genus characterized by the position of its process. Phytotaxa142: 25-36. http://biotaxa.org/Phytotaxa/article/view/phytotaxa.142.1.3

29. Gomes T, Araújo O, Pereira R, Almeida AC, Cravo A, Bebianno MJ (2013) Genotoxicity of copper oxide and silver nanoparticles in the mussel Mytilus galloprovincialis. Marine Environmental Research 84: 51-59. http://www.sciencedirect.com/science/article/pii/S0141113612002188

30. Gomes T, Gonzalez-Rey M, Rodríguez-Romero A, Trombini C, Riba I, Blasco J, Bebianno MJ (2013) Biomarkers in Nereis diversicolor (Polychaeta: Nereididae) as management tools for environmental assessment on the southwest Iberian coast. Scientia Marina 77: 69-78. http://www.icm.csic.es/scimar/index.php/secId/7/IdArt/4163/

31. Gomes T, Pereira CG, Cardoso C, Bebianno MJ (2013) Differential protein expression in mussels Mytilus galloprovincialis exposed to nano and ionic Ag. Aquatic Toxicology 136: 79-90. http://www.sciencedirect.com/science/article/pii/S0166445X13000908

32. Gonzalez-Rey M, Bebianno MJ (2013) Does selective serotonin reuptake inhibitor (SSRI) fluoxetine affects mussel Mytilus galloprovincialis? Environmental Pollution 173: 200-209. http://www.sciencedirect.com/science/article/pii/S0269749112004575

33. Guimarães MH, Ballé-Béganton J, Bailly D, Newton A, Boski T, Dentinho T (2013) Transdisciplinary conceptual modeling of a social-ecological system—A case study application in Terceira Island, Azores. Ecosystem Services 3: e22-e31. http://www.sciencedirect.com/science/article/pii/S2212041612000630.

34. Horta J, Moura D, Gabriel S, Ferreira Ó (2013) Measurement of pocket beach morphology using geographic information technology: the MAPBeach toolbox. Journal of Coastal Research 65: 1397-1402. http://ics2013.org/papers/Paper4078_rev.pdf

35. Jorge RCGS, Fernandes P, Rodrigues B, Pereira Z, Oliveira JT (2013) Geochemistry and Provenance of the Carboniferous Baixo Alentejo Flysch Group, South Portuguese Zone. Sedimentary Geology 284-285: 133-148. http://www.sciencedirect.com/science/article/pii/S0037073812003302




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37. Loureiro C, Ferreira Ó, Cooper JAG (2013) Applicability of parametric beach morphodynamic state classification on embayed beaches. Marine Geology 346: 153-164. http://dx.doi.org/10.1016/j.margeo.2013.09.005

38. Maria VL, Gomes T, Barreira L, Bebianno MJ (2013) Impact of benzo(a)pyrene, Cu and their mixture on the proteomic response of Mytilus galloprovincialis. Aquatic Toxicology 144-145: 284-295. http://www.sciencedirect.com/science/article/pii/S0166445X13002701

39. Martins I, Company R, Cerqueira T, Bebianno MJ, Santos RS, Bettencourt R (2013) Metalloproteinase activity in the hemolymph of hydrothermal vent mussel Bathymodiolus azoricus. Fish & Shellfish Immunology 34: 1666. http://www.sciencedirect.com/science/article/pii/S105046481300199X

40. Martins MVA, Dias JA, Bernardes C, Rubio B, Bernabeu A, Rey D, Soares AM, Sobrinho F, Laut LM, Frontalini F, Terroso D, Miranda P, Fernández-Fernández S, Rodrigues MA; Figueira, R, Sousa S, Amaral P, Mahiques M, Rocha F (2013) The ITRAX core scanner, a useful tool to distinguish anthropic vs. climatic influences in lagoon of Aveiro (N Portugal). Journal of Coastal Research 65: 70-75. http://w3.ualg.pt/~jdias/JAD/papers/13%20Martins%20-%20ICS2013_b.pdf

41. Martins V, Dias JA, Laut LM, Sobrinho F, Santos JF, Rodrigues MA, Frontalini F, Miranda P, Terroso D, Fernández-Fernández S, Ferreira B, Bernardes C, Figueira R, Sousa S, Amaral P, Mahiques M, Bernabeu A, Rey D, Rubio B, Rocha F (2013) Speciation of rare earth elements in surface sediments of Lagoon of Aveiro (N Portugal). Journal of Coastal Research 65: 64-69. http://ria.ua.pt/handle/10773/10615

42. Martins V, Frontalini F, Tramonte KM, Figueira R, Miranda P, Sequeira C, Fernández-Fernández S, Dias JA, Yamashita C, Renó R, Laut LLM, Silva FS, Rodrigues MA, Bernardes C, Nagai R, Sousa SHM; Mahiques M, Rubio B, Berbaneu A, Rey D, Rocha, F (2013) Assessment of the health quality of Ria de Aveiro (Portugal): Heavy metals and benthic foraminifera. Marine Pollution Bulletin 70: 18-33. http://www.sciencedirect.com/science/article/pii/S0025326X13000581

43. Martins V, Rocha F, Sequeira C, Martins P, Santos JF, Dias JMA, Weber O, Jouanneau J-M, Rubio B, Rey D, Bernabeu A, Silva E, Laut LM, Figueira RCL (2013) Late Holocene climatic oscillations traced by clay mineral assemblages and other palaeoceanographic proxies in Ria de Vigo (NW Spain). Turkish Journal of Earth Sciences 22: 398-413. http://ria.ua.pt/handle/10773/9665

44. Masselink G, Turner IL, Conley DC, Ruessink BG, Matias A, Thompson C, Castelle B,Wolters, G (2013) BARDEX II: Bringing the beach to the laboratory – again! Journal of Coastal Research 65: 1545-1550. http://ics2013.org/papers/Paper3577_rev.pdf

45. Matias A, Masselink G, Kroon A, Blenkinsoop C, Turner I (2013) Overwash experiment on a sandy barrier. Journal of Coastal Research 65: 778-783. http://ics2013.org/papers/Paper3943_rev.pdf

46. Mendes I, Dias JA, Schönfeld J, Ferreira Ó, Rosa F, Lobo FJ (2013) Living, dead and fossil benthic foraminifera on a river dominated shelf (northern Gulf of Cadiz) and their use for paleoenvironmental reconstruction. Continental Shelf Research 68: 91-111. http://www.sciencedirect.com/science/article/pii/S0278434313002811

47. Palma P, Ledo L, Soares S, Barbosa IR, Alvarenga P (2013) Integrated environmental assessment of freshwater sediments: a chemical and ecotoxicological approach at the Alqueva reservoir. Environ Geochem Health. http://link.springer.com/article/10.1007/s10653-013-9559-2#


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48. Paula DP, Dias JMA, Ferreira Ó, Morais JO (2013) High-rise development of the sea-front at Fortaleza (Brazil): Perspectives on its valuation and consequences. Ocean and Coastal Management 77: 14-23. http://www.sciencedirect.com/science/article/pii/S0964569112000518

49. Pereira C, Gomes T, Cardoso C, Almeida AC, Araújo O, Bebianno MJ, Cravo A (2013) Interspecific variability of endocrine disruption and oxidative stress in two bivalve species from the Ria Formosa Lagoon (South Coast of Portugal). Scientia Marina 77: 79-89. http://scientiamarina.revistas.csic.es/index.php/scientiamarina/article/viewArticle/1425

50. Pereira C, Gomes T, Cardoso, C, Almeida, AC, Araújo O, Bebianno MJ, Cravo A (2013) Interspecific variability of endocrine disruption and oxidative stress in two bivalve species from the Ria Formosa Lagoon (south coast of Portugal). Scientia Marina 77: 79-89. http://www.icm.csic.es/scimar/index.php/secId/7/IdArt/4164/

51. Pinheiro N, Barreira L, Lopes B, Bebianno MJ (2013) Assessment of oil contamination in the bay of Porto Grande (Cape Verde) using the mullet Chelon bispinosus. African African Journal of Environmental Science and Technology 7: 657-670. http://www.ajol.info/index.php/ajest/article/view/93907

52. Puy-Azurmendi E, Ortiz-Zarragoitia M, Kuster M, Martínez E, Guillamón M, Aragón P, Atienza J, Puchades R, Maquieira A, Domínguez C, López de Alda M, Fernandes D, Porte C, Bayona JM, Barceló D, Cajaraville MP (2013) Endocrine disruption in thicklip grey mullet (Chelon labrosus) from the Urdaibai Biosphere Reserve (Bay of Biscay, Southwestern Europe). Science of the Total Environment 443: 233-244. http://www.sciencedirect.com/science/article/pii/S0048969712013691

53. Rocha M, Silva P, Michallet H, Abreu T, Moura D, Fortes J (2013) Parameterizations of wave nonlinearity from local wave parameters: a comparision with field data. Journal of Coastal Research 65: 374-379. http://ics2013.org/papers/Paper4107_rev.pdf

54. Rodrigues MA, Reis MP, Mateus MC (2013) Liquid chromatography/negative electrospray ionization ion trap MS2 mass spectrometry application for the determination of microcystins occurrence in Southern Portugal water reservoirs. Toxicon 74: 8–18. http://www.sciencedirect.com/science/article/pii/S0041010113002560

55. Rosa F, Rufino MM, Ferreira Ó, Matias A, Brito AC, Gaspar MB (2013) The influence of coastal processes on inner shelf sediment distribution: The Eastern Algarve shelf (Southern Portugal). Geologica Acta, 11: 59-73. http://www.geologica- acta.com/MostrarAbstractAC.do?abstract=gav1101a04

56. Roselli L, Cañedo-Arguelles M, Goela PC, Cristina S, Rieradevall M, D’Adamo R, Newton A (2013) Do physiography and hydrology determine the physico-chemical properties and trophic status of coastal lagoons? A comparative approach. Estuarine and Coastal and Shelf Science 117: 29-36. http://www.sciencedirect.com/science/article/pii/S0272771412003733

57. Serafim A, Company R, Lopes B, Pereira C, Cravo A, Fonseca VF, França S, Bebianno MJ, Cabral HN (2013) Evaluation of sediment toxicity in different Portuguese estuaries: Ecological impact of metals and polycyclic aromatic hydrocarbons. Estuarine, Coastal and Shelf Science 130: 30-41. http://www.sciencedirect.com/science/article/pii/S0272771413002047

58. Teixeira MAC, Argaín JL, Miranda PMA. (2013) Drag produced by trapped lee waves and propagating mountain waves in a two-layer atmosphere. Quarterly Journal of the Royal Meteorological Society 139: 964–981. http://onlinelibrary.wiley.com/doi/10.1002/qj.2008/abstract


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60. Vieira VMNCS, Martins F, Silva J, Santos R (2013). Numerical tools to estimate the flux of a gas across the air–water interface and assess the heterogeneity of its forcing functions. Ocean Science 9: 355-375. http://www.ocean-sci.net/9/355/2013/os-9-355-2013.html

Artigos em revistas nacionais (1)

1. Wilamowski A, Boski T, Moura D, Duarte D, Santana, P (2013) Micro-scale sideritic concretions in Holocene sediments of Guadiana estuary, Southern Portugal: their structure, composition and origin. Comunicações Geológicas 100: 15-20. http://www.lneg.pt/iedt/unidades/16/paginas/26/30/141

B - Comunicações

Comunicações em encontros científicos internacionais (82)

1. Alvarenga P, Mourinha C, Farto M, Palma P (2013). Use of aquatic bioassays to assess the potential impact on surface and groundwater from the application of different organic wastes as soil amendments. Comunicação apresentada na “CICTA 2013 - 9th Iberian and 6th Iberoamerican Congress on Environmental Contamination and Toxicology”, que se realizou em Valencia (Espanha), 1 a 4 de Julho de 2013.

2. Alvarenga P, Palma P, Mourinha C, Farto M, Cunha-Queda C, Natal-da-Luz T, Sousa JP (2013) Environmental risk assessment of the use of different organic wastes as soil amendments. Comunicação oral apresentada na “EGU 2013 – European Geosciences Union General Assembly 2013”, Viena (Áustria), 7 a 12 de Abril de 2013.

3. Alvarenga P, Simões I, Palma P, Amaral O, Matos JX (2013) Accumulation of trace elements in edible plants produced in the vicinity of abandoned mining areas: the case study of mines located in the Iberian Pyrite Belt. Comunicação apresentada na Conferência Anual da Cost Action FA 0905 - Mineral Improved Crop Production for Healthy Food and Feed, Ås (Noruega), 9 a 13 de Junho de 2013. P50.

4. Alvarenga P, Simões I, Palma P, Amaral O, Matos JX (2013) Influence of mining activities on the accumulation of trace elements in edible plants: the case study of mines located in the Iberian Pyrite Belt. Comunicação apresentada no “23rd SETAC Europe Annual Meeting ”, Glasgow (Escócia), 12-16 de Maio de 2013. SETAC 2013 (MO202). http://glasgow.setac.eu/scientific_programme/?contentid=606&pr_id=569

5. Aníbal J, Madeira HT, Carvalho LF, Esteves E, Veiga-Pires C, Rocha C (2013) Mitigation od Nitrogen Discharges from Fish Aquaculture effluents using Green Macroalgae. In: PRIMO17. 5-8 May, Faro, Portugal, p. 125. http://hdl.handle.net/10400.1/3308

6. Aníbal J, Madeira HT, Carvalho LF, Esteves E, Veiga-Pires C, Rocha C (2013) Mitigation of nitrogen discharges from fish aquaculture effluents using green macroalgae. Proceedings of 17th

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International Conference on Pollutant Responses in Marine Organisms - PRIMO17, Universidade do Algarve, Portugal, 125 p.

7. Argaín JL, Teixeira MAC, Miranda PMA (2013), Orographic effects of lee waves at a temperature jump, poster presentation at 8º Simpósio de Meteorologia e Geofísica da APMG, 14º Encontro Luso-Espanhol de Meteorologia, Ericeira, Portugal, 18 - 20 March, 2013.

8. Barbosa AB, Domingues RB (2013) Regulation of plankton metabolism in a mesotidal coastal lagoon. Symposium on the Problems of Small Estuaries, Swansea, UK, 8-11 Abril 2013.

9. Borja A, Elliot M, Austen M, Heiskanen A, Berg T, Lynam C, Wilson C, Danovaro R, Cochrane S, Carstensen J, Newton A, et al. (2013) Improved understanding of marine biodiversity: modelling, improved indicators, and integrated assessment (DEVOTES project 2012-2016). ICES Annual Science Conference 2013 Reykjavik, Iceland, 23rd-27th September 2013. Poster

10. Boski T, Moura D, Sousa C, Gomes A, Pereira L, Oliveira S, Santana P (2013) Mudança do nível do mar no golfo de Cádiz durante o Plistocénico tardio e Holocénico. VIII Reunión de Cuaternario Ibérico, La Rinconada – Sevilla.

11. Boski T, Sousa C, Oliveira S, Gomes A (2013) Didactic multimedia platform with applications for coastal planning.III BRASPOR Meeting, Ponte de Lima, Portugal. http://braspor.org

12. Brito A, Newton A (2013) Lagoon Ecosystem Services.VI EUROLAG & VII LAGUNET Conference: “COASTAL LAGOON DOMAIN AND PROPERTIES: from fundamental research to policy implementation” Lecce, Italy. 16-19 December 2013

13. Caetano S, Costa C, Rodrigues M, Vidal F, Ledo L, Palma P, Mateus MC, Moreira-Santos M, Ribeiro R, Barbosa IR, Reis MP (2013) Repeated major late summer Cylindrospermopsis raciborskii blooms in Alqueva reservoir and their toxicity risk. 2nd International Conference on Ocupational and Environmental Toxicology, 16th & 17th September 2013, Porto, Portugal.

14. Carrasco AR, Ferreira Ó, Matias A (2013) Managing flood risk in fetch-limited environments: what can be done? 12th International Coastal Symposium, Plymouth, UK, April 2013.

15. Company R, Cosson RP, Torreblanca A, Bebianno MJ, Cajaraville MP (2013) Antioxidant gene expression in cold seep mussels Bathymodiolus boomerang from two West African Coast sites. PRIMO 17 - Pollutant Responses in Marine Organisms 5th-8th May 2013, University of Algarve – Faro.

16. Constantino A, Lino P, Raposo S, Rodrigues B, Starkey R, Pinto A, Lima-Costa ME (2013) Effects of acetic acid on carob sugar-rich pulp fermentation. Proceedings of 5th International Congress on Energy, Environmental Engineering and Management (CIIEM).

17. Cravo A, Cardeira S, Pereira C, Rosa M, Madureira M, Rita F, Luís J, Jacob J (2013) Nutrients and particulate matter exchanges through the Ria Formosa coastal lagoon, Portugal.

18. Delgado-Serrano MM, Ambrosio-Albalá MJ, Newton A (2013) Linking Knowledge to Action” Science for Environment 2013 Aarhus, Denmark 3rd-4th October 2013.

19. Dias E, Morais P, Antunes C, Hoffman J (2013) When gourmet is not enough: Organic matter sources supporting the high production of Corbicula fluminea in an invaded estuary. 22nd CERF conference. San Diego (USA), November 6, 2013. http://www.sgmeet.com/cerf2013/files/CERF2013-Abstract-Book.pdf

20. Domingues RB, Barbosa AB, Galvão HM (2013) Effects of river damming on estuarine phytoplankton: the Guadiana estuary case study (SW Iberia). Symposium on the Problems of Small Estuaries, Swansea, UK, 8-11 April 2013.

21. Fernandes D, Pujol S, Pérez E, Bebianno MJ, Porte C (2013) Characterization of the environmental quality of sediments of two estuarine systems (S Portugal) based on different in-vitro bioassays.

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“PRIMO 17: Pollutant Responses in Marine Organisms- 17th International Symposium”. Faro (Portugal). 5th-8th May 2013.

22. Fernandes D, Pujol S, Porte C (2013) Synthetic progestagens interfere with the synthesis of androgens and estrogens in gonads of Cyprinus carpio. “17th International Congress of Comparative Endocrinology – 17th ICCE 2013”. Barcelona (Spain), 15th-19th July 2013.

23. Ferreira Ó, Reis MT, Carrasco AR, Neves MG, Didier E (2013) Small overtopping discharges at Albufeira harbour: field measurements and modelling. 6th SCACR ¬ International Short Course/Conference on Applied Coastal Research, LNEC, Lisboa, Junho 2013.

24. Figueiredo M, Gomes J, Gomes C (2013) Creating learning activities using Augmented Reality tools. In Proc. of the 2nd Experiment@ International Conference Online Experimentation, pp. 301-305, 2013. http://w3.ualg.pt/~mfiguei/papers_pdf/13_experiment.pdf

25. Font E, Fabre S, Nédélec A, Adatte T, Keller G, Veiga-Pires C, Ponte J, Mirão J, Khozyem H, Spangenberg J (2013) Atmospheric halogen and acid rains during the major Deccan episode : magnetic and mineral evidences. In: EGU 2013. Vienna, p. 117298. http://hdl.handle.net/10400.1/3075

26. Font E, Veiga-Pires C, Camps P, Carvallo C, De AC, Neto S, Pozo M, Mirão J (2013) Magnetic fingerprint of stalagmites. In: EGU 2013. Vienna, p. 110205. http://hdl.handle.net/10400.1/3072

27. Font E, Veiga-Pires C, Pozo M, Nave S (2013) Benchmarks, sediment source and hydrodynamics of the 1755 Lisbon tsunami deposit at Boca do Rio Estuary. In: EGU 2013. Vienna. http://hdl.handle.net/10400.1/3078

28. Font E, Veiga-Pires C, Pozo M, Nave S, Costa S, Muñoz FR, Abad M (2013) Identification of tsunami deposits and their impact on coastal zones: A study case of the Boca do Rio estuary (Algarve , Portugal). In: 4th Open Science Meeting. Goa, 10-15 February, p. 28. http://hdl.handle.net/10400.1/2832

29. Foufoula-Georgiou E, Overeem I, Saito Y, Dech S, Kuenzer C, Goodbred S, Harrison I, Anthony E, Brondizio E, Hutton J, Nicholls R, Matthews Z, Dearing J, Lazar A, Baschieri A, Newton A, et al. (2013) A vision for a coordinated international effort on delta sustainability. ECSA53 Symposium Shanghai, 13th-17th October 2013.

30. Frias P, Horta J, Almeida LP, Pacheco A, Ferreira Ó (2013) Development of a WebGIS tool to determine tidal inlet evolution. 12th International Coastal Symposium, Plymouth, UK, April 2013.

31. Gabriel S, Horta J, Moura D, Filho FPL, Teixeira WLE, Jacob J, Silva VA, Boski T (2013) Shore platform surface roughness based on terrestrial laser scan survey. 12th International Coastal Symposium, Plymouth University, 95. http://ics2013.org/ICS2013_Book_of_Abstracts.pdf

32. Gabriel S, Moura D, Horta J, Jacob J (2013) Monitoring of waves in rocky shores: comparison between a shore platform and the adjacent pocket beach. Coastal Dynamics 2013, 24-28 June 2013, Arcachon Convention Centre, France. http://www.coastaldynamics2013.fr/pdf_files/062_Gabriel_Selma.pdf

33. Gabriel S, Oliveira S, Horta J, Moura D (2013) Rocky coast dynamics- comparison between shore platforms and adjacent sandy beach. I8th IAG- nternational Conference on Geomorphology, 27-31 de Agosto, Paris. http://jphorta.site40.net/ABSTRACTS_BOOK_IAG_PARIS_2013.pdf

34. Garcia T, Gomes T, Serafim A, Company R, Sousa V, Teixeira M, Bebianno MJ (2013) Effects of copper nanoparticles IN THE CLAM RUDITAPES DECUSSATUS: WATER AND SEDIMENT as ROUTES OF EXPOSURE. PRIMO 17 - Pollutant Responses In Marine Organisms 5th-8th May 2013, University of Algarve – Faro.

http://w3.ualg.pt/~mfiguei/papers_pdf/13_experiment.pdf





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35. Geurra L, Ruiz F, Abad M, Veiga-Pires C (2013) Foraminifera as tsunami tracers in Holocene sequences of Southwestern Spain. In: VIII Reunión de Cuaternário Ibérico. Sevilla, Septembre 2013, pp. 273–275. http://hdl.handle.net/10400.1/3056

36. Gomes A, Pereira L, Boski T, Moura D, Connor S, Sousa C, Oliveira S, Santana P (2013) O registo de diatomáceas e foraminiferos da Ria Formosa (Sul da Península Ibérica): uma contribuição para a compreensão da evolução Holocénica do sistema lagunar. VIII Reunión de Cuaternario Ibérico, La Rinconada – Sevilla.

37. Horta J, Moura D, Gabriel S, Ferreira Ó (2013) Measurement of pocket beach morphology using geographic information technology. 12th International Coastal Symposium, Plymouth University, 411. http://ics2013.org/ICS2013_Book_of_Abstracts.pdf

38. Icely JD (2013). Sagres Validation Ocean Colour Portugal - (SagValOCPort). Sentinel 3 Validation Team 1st Meeting ESA-ESRIN Frascati, Italy 26-29th November 2013

39. Icely JD, Cristina SV, Goela PC, Moore GF, Danchenko SA, Newton A (2013) Validation of MERIS products at Sagres, SW Portugal between 2008-2012. ESA Living Planet Symposium. Edinburgh, 9th-13th September 2013.

40. Icely JD, Moore GF, Cristina SV, Goela PC, Newton A (2013) Linking MERIS validation at Sagres, SW Portugal with validation of OLCI and SLSTR sensors on Sentinel -3. ESA Living Planet Symposium. Edinburgh, 9th-13th September 2013

41. Icely JD, Moore GF, Goela PC, Cristina SC, Danchenko S, Fragoso BF, Newton A (2013) Proposal for the validation of the Sentinel-3, OLCI and SLSTR sensors, off Sagres, SW Portugal. Sentinel 3 Validation Team 1st Meeting ESA-ESRIN Frascati, Italy 26-29th November 2013

42. Jacob J, Cardeira S, Rodrigues M, Bruneau N, Azevedo A, Fortunato AB, Rosa M, Cravo A (2013) Experimental and numerical study of the hydrodynamics of the western sector of Ria Formosa. 12th International Coastal Symposium, Plymouth University, 8-12 April 2013.

43. Janeiro J, Martins F, Zacharioudaki A, Sahardi E, Neves A (2013) Enhancing the management response to oil spills in the Tuscany Archipelago through operational modeling. 7th International Conference on Marine Pollution and Ecotoxicology, Hong Kong, China. http://www.biosch.hku.hk/icmpe7/download/ICMPE7_Oral_Presentation_Abstract_2013.pdf

44. Lazzara R, Fernandes D, Barata C, Porte C (2013) Differential effects of clofibrate and tributyltin exposure on zebra mussel lipids. Oral Submitted and accepted in the Scientific Congress “9th Iberian and 6th Iberoamerican Congress of Environmental contamination and Toxicology - CICTA 2013”. Valencia (Spain), July 1st-4th 2013.

45. Lobo FJ, Bárcenas P, Mendes I, Fernández-Salas LM, Jabaloy A (2013) Different responses of deltaic systems to human interventions in river basins of southern Iberia. 30 th IAS Meeting of Sedimentology, 2-5 September, Manchester, UK. http://www.sedimentologists.org/docs/library/ims-2013/third_circular.pdf

46. Lopes B, Serafim A, Arrebola JP, Company R, Olea N (2013) Maternal and umbilical cord serum concentrations of persistent organic pollutants (POPs) in a human cohort from South Portugal. 2nd International conference on Occupational and Environmental Ecotoxicology, 16-17 September 2013, Porto

47. Lopes B, Serafim A, Arrebola JP, Company R, Olea N (2013) Persistent organic pollutants concentrations in maternal serum and umbilical cord serum in a human cohort from South Portugal. XII Congreso Español dev Salud Ambiental, VIII Conferencia Nacional de Disruptores Endocrinos, 12-14 Junio, Granada.

48. Loureiro C, Ferreira Ó, Cooper JAG (2013) Embayed configuration and geological control on beach morphodynamics and management: an overview of contrasting responses in embayed beaches of



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southwestern Portugal. 8th IAG International Conference on Geomorphology, Paris, France. August 2013.

49. Madeira HT, Aníbal J, Carvalho LF, Esteves E, Veiga-Pires C, Rocha C (2013). Effects of Temperature and salinity on Nitrate Uptake by Green Macroalgae. In: PRIMO17. 5-8 May, Faro, Portugal, p. 252. http://hdl.handle.net/10400.1/3307

50. Masselink G, Turner IL, Conley DC, Ruessink BG, Matias A, Thompson C, Castelle B, Wolters G (2013) BARDEX II: Bringing the beach to the laboratory – again!, Proceedings 12th International Coastal Symposium, Plymouth, U.K, April 2013.

51. Matias A, Carrasco AR, Pacheco A, Loureiro C, Nunes M, Ferreira Ó, Armaroli C, Masselink G (2013) Longshore variation of overwash occurrence in a barrier Island (Portugal). 8th IAG International Conference on Geomorphology. Paris, France, August 2013.

52. Matias A, Masselink G, Kroon A, Blenkinsoop C, Turner I (2013) Overwash experiment on a sandy barrier. 12th International Coastal Symposium, Plymouth, UK, April 2013.

53. Mendes I, Lobo FJ, Ferreira Ó, Schönfeld J, Rosa F, Bárcenas P, Fernandez-Salas LM, López-González N, Dias JA (2013) Benthic foraminiferal and sedimentological response to the evolution of the Adra submarine delta, northern Alboran Sea. 11th International Conference on Paleoceanography, 1-6 September, Sitges – Barcelona, Spain. http://www.icp2013.cat/USB/PDF/P-462.PDF

54. Miranda PMA, Teixeira MAC, Argaín JL (2013) Trapped lee wave drag in two-layer atmospheres. Oral presentation at "European Geosciences Union General Assembly 2013", Vienna, Austria, 07 –12 April. In Geophysical Research Abstracts, Vol. 15, EGU2013-7884, 2013 - http://meetingorganizer.copernicus.org/EGU2013/EGU2013-7884.pdf

55. Morais P, Daverat F, Dias E, Babaluk J, Martin J, Eon M, Fablet R, Pécheyran C, Antunes C (2013) Plasticity of European flounder life history patterns discloses alternatives to catadromy. 22nd CERF conference. San Diego (USA), November 5, 2013. http://www.sgmeet.com/cerf2013/files/CERF2013-Abstract-Book.pdf

56. Nunes M, Ferreira Ó, Baily B, Calvão J (2013) Beach nourishment impact in receding soft rock coastal cliffs using remote sensing techniques (Forte Novo, south Portugal). 8th IAG International Conference on Geomorphology, Paris, France, August 2013.

57. Oliveira S, Boski T, Moura D, Sousa C, Gomes A, Pereira L (2013) Interactive multimedia application of Ria Formosa (Portugal) for educational purposes (FORDID). II International Conference on Illustration & Animation (CONFIA), Porto, 2013.

58. Palma P, Ledo L, Barbosa IR, Alvarenga P (2013) Assessing the environmental impact of mining activities in the Alqueva reservoir (Guadiana basin, Southern of Portugal). 7th SETAC World Congress/SETAC Europe 23rd Annual Meeting. 12-16 de Maio. Glasgow. Escócia. pp 197. http://glasgow.setac.eu/scientific_programme/?contentid=606&pr_id=569

59. Palma P, Ledo L, Köck M, López de Alda MJ, Barbosa IR, Barceló D, Alvarenga P (2013) Sub-lethal endpoints for the evaluation of surface waters toxicity: case-study of the Alqueva reservoir (Guadiana Basin; Southern Portugal). “9th Iberian and 6th Iberoamerican Congress on Environmental Contamination and Toxicology – CICTA2013”, Valencia (Espanha), 1-4 of Julho 2013. pp 98.

60. Palma P, Matos C, Köck M, Ledo L, Simões I, López de Alda MJ, Barceló D (2013) Ecological and ecotoxicological responses to water pollution: a case-study of the temporary river Brejo do Carragão (South of Portugal). 7th SETAC World Congress/SETAC Europe 23rd Annual Meeting. 12-16 de Maio. Glasgow. Escócia. pp 177.


http://www.icp2013.cat/USB/PDF/P-462.PDF

http://meetingorganizer.copernicus.org/EGU2013/EGU2013-7884.pdf

http://www.sgmeet.com/cerf2013/files/CERF2013-Abstract-Book.pdf

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61. Palma P, Ledo L, Rodrigues MA, Köck M, López de Alda MJ, Mateus MC, Alvarenga P, Barbosa IR, Caetano S, Costa C, Reis MP, Barceló D (2013) Environmental risk assessment of toxic stressors in Alqueva reservoir. Pollutant Responses in Marine Organisms. Pollutant Responses in Marine Organisms PRIMO 17. Universidade do Algarve, 5-8 May 2013, Faro, Algarve. p.148;

62. Pereira L, Gomes A, Boski T, Szalaj D, Connor S (2013) The Holocene paleoenvironmental reconstruction of the Ria Formosa lagoon system (SW Iberia Peninsula): Foraminifera based study. VIII Reunión de Cuaternario Ibérico, La Rinconada – Sevilla, 2013.

63. Reis R, Gabriel S, Fortes CJ, Moura D (2013) Assessment of the wave characteristics at Galé beach, Portugal, using in-situ and transferred data. 6th International Short Course/Conference on Applied Coastal Research (SCACR), National Laboratory for Civil Engineering (LNEC), Lisbon, Portugal, 4-7 June 2013. http://6scacr.lnec.pt/26_Reis_Rui.pdf

64. Rocha VL, Silva A, Michallet H, Abreu T, Moura D, Conceição JEM (2013) Parameterizations of wave nonlinearity from local wave parameters: a comparison with field data. 12th International Coastal Symposium, Plymouth University, 223. http://ics2013.org/ICS2013_Book_of_Abstracts.pdf

65. Rodrigues JI, Figueiredo M, Costa C (2013) Web3DGIS for City Models with CityGML and X3D. In Proc. of the 17th International Conference on Information Visualization, pp. 384-388. http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6676590

66. Ruiz F, Rodriguez-Vidal J, Cáceres LM, Carretero MI, Pozo M, Gómez-Toscano F, Izquierdo T, Font E, Guerra L, Veiga-Pires C (2013) Morpho-sedimentary evidence of Holocene tsunamis in Southwestern Spain estuaries: A summary. In: VIII Reunión de Cuaternário Ibérico. Sevilla, Septembre 2013, pp. 145–149. http://hdl.handle.net/10400.1/3057

67. Sampath DMR, Boski T (2013) Assessment of Impacts on intertidal zone Habitats of the Guadiana Estuary due to Sea-level Rise during the 21st century. VII Jornadas de Geomorfología Litoral, 17-19th July 2013, Unversity of Oviedo, Spain.

68. Sampath DMR, Padilla S, Delgado J, López-Gutiérrez JM, Nieto JM, Boski T (2013) Estimation of denudation rates of the drainage basin of the Guadiana river using 10Be isotope method and sediment budget method, V RCANS CONGRESS, 24-26 September 2013, Univ. of Huelva, Spain.

69. Serafim A, Company R, Lopes B, Ferreira A, Olea N, Bebianno MJ (2013) Distribution of environmental cadmium between maternal, fetal and placenta blood. XII Congreso Español de Salud Ambiental, VIII Conferencia Nacional de Disruptores Endocrinos, 12-14 Junio, Granada.

70. Serafim A, Company R, Lopes B, Olea N, Rosa J, Bebianno MJ (2013) Assessment of mercury in maternal and newborn umbilical cord blood from south Portugal. XII Congreso Español de Salud Ambiental, VIII Conferencia Nacional de Disruptores Endocrinos, 12-14 Junio, Granada.

71. Serafim A, Company R, Lopes B, Olea N, Rosa J, Bebianno MJ (2013) Levels of Hg in maternal and newborn umbilical cord blood from south Portugal. 2nd International conference on Occupational and Environmental Ecotoxicology, 16-17 September 2013, Porto

72. Silva PA, Gonçalves D, Abreu T, Rocha M, Aldeano E, Moura D, Jacob J, Gabriel S, Horta J, Fortes CJ, Santos JA, Neves D (2013) Wave propagation in a sandy beach and adjacent shore platform. 12th International Coastal Symposium, Plymouth University, 251. http://ics2013.org/ICS2013_Book_of_Abstracts.pdf

73. Silvestre I, Rodrigues JI, Figueiredo M, Veiga-Pires C (2013) Cave chamber data modeling and 3D Web visualization”. In Proc. of the 17th International Conference on Information Visualization, pp. 468-473. http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6676603

http://6scacr.lnec.pt/26_Reis_Rui.pdf


http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6676590



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74. Silvestre I, Rodrigues JI, Figueiredo M, Veiga-Pires C (2013) Cave chamber data modeling and 3D Web visualization. In: GMAI13: 8th International Conference on Geometric Modeling & Imaging. London, UK, pp. 15–18 July. http://hdl.handle.net/10400.1/3076

75. Silvestre I, Rodrigues JI, Figueiredo M, Veiga-Pires C (2013) Framework for 3D data modeling and Web visualization of underground caves using open source tools. In Proc. of the 18th International Conference on 3D Web Technology, pp. 121-128. http://dl.acm.org/citation.cfm?id=2466549

76. Silvestre I, Rodrigues JI, Figueiredo M, Veiga-Pires C (2013) Framework for 3D data modeling and Web visualization of underground caves using open source tools. In: Web3D 2013. June 20-22, San Sebastian, Spain, pp. 121–128. http://hdl.handle.net/10400.1/3067

77. Sousa C, Boski T, Gomes A, Pereira L, Lampreia J, Oliveira S (2013) Holocene history of Ria Formosa coastal lagoon system (Southern Portugal): borehole evidence and threedimensional paleotopography. VIII Reunión de Cuaternario Ibérico, La Rinconada – Sevilla, 2013.

78. Teixeira MAC, Argain JL, Miranda PMA (2013) Trapped lee wave drag in two-layer atmospheres. International Conference of Alpine Meteorology, Kranjska Gora, Slovenia, 3 - 7 June, 2013. http://www.arso.gov.si/novice/datoteke/030257-ICAM2013_Programme.pdf

79. Valente T, Hill B, Raposo A, Esteves F, Reis MP, Fonseca F (2013) Functional characterization of the polyextremophile Coccomyxa sp. isolated from the acid mine drainage of S. Domingos (Portugal). In: PRIMO 17 - Pollutant Responses in Marine Organisms. University of Algarve – Faro. 5th-8th May 2013.

80. Veiga-Pires C, Coelho C, Moura D, Luis J (2013) An open source geophysical software for studying speleothem growth bands and comparing with a reference curve: Mirone. In INTIMATE Cost workshop, Castle, Scotland, 29-31st May. http://hdl.handle.net/10400.1/3079

81. Wasiak K, Sroczyńska K, Claro M, Range P, Ben-Hamadou R, Wojtał-Frankiewicz A, Chícharo L (2013) Metabolic response of aquatic communities to seasonal changes in environmental variables in a Mediterranean-type intermittent river. Ecohydrology, Biotechnology and Engineering: Towards the Harmony between Biogeosphere and Society on the basis of Long Term Ecosystem Research - 16-22 September 2013, Lodz, Poland.

82. Witkowski A, Barka F, Gusev E, Trobajo R, Mann DG, Dabek P, Gomes AI, Gorecka EI, Krzywda M, Desrosiers C (2013) Reassessment of Simonsenia (Bacillariophyceae) from Morphology and Molecular Phylogenetic Data Suggests a Relationship to Pseudonitzschia. 10th International Phycological Congress. Orlando, USA. http://ipc10.intphycsoc.org/

Comunicações em encontros científicos nacionais (17)

1. Alvarenga P, Mourinha C, Farto M, Simões I, Palma P (2013) Caracterização química e ecotoxicológica do lixiviado de resíduos orgânicos com potencial interesse para valorização agrícola. Comunicação apresentada no Encontro Anual da Sociedade Portuguesa de Ciência do Solo – EACS 2013. Oeiras, 26-28 de Junho 2013. P75.

2. Boski T, Sousa C, Oliveira S, Gomes A (2013) Didactic multimedia platform with applications for coastal planning. III BRASPOR Meeting, Ponte de Lima, Portugal.

3. Carrasco AR, Ferreira Ó, Matias A, Vila AG (2013) Descargas de galgamento num quebra-mar durante períodos de tempestade. 8as Jornadas Portuguesas de Engenharia Costeira e Portuária, PIANC/LNEC, Lisboa, Portugal, Setembro 2013.


http://dl.acm.org/citation.cfm?id=2466549


http://www.arso.gov.si/novice/datoteke/030257-ICAM2013_Programme.pdf


http://ipc10.intphycsoc.org/


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4. Fernandes P, Rodrigues B, Jorge RCGS, Marques J (2013) Potencial gerador de hidrocarbonetos dos argilitos carbonosos do Karoo Inferior (Pérmico) da Bacia de Moatize – Minjova, Província de Tete, Moçambique. 13ª Conferência de Recursos Geológicos, Ambiente e Ordenamento do Território. Universidade de Trás-os-Montes e Alto Douro. Livro de Actas, pp. 63-70. ISBN: 978-989-704-153-2

5. Gilberto V, Dias E, Antunes C, Morais P (2013). Review on the impact of great cormorants on European fisheries. 6º Encontro de Investigação Jovem da Universidade do Porto. IJUP 2013. Porto (Portugal), February 14, 2013. http://www.ijup.up.pt/2013/DOCS/Orais.pdf

6. Horta J, Moura D, Gabriel S (2013) Geographic information technologies for quantification of morphological variables in pocket beaches. Proceedings III CJIG, LEG 2013 & 6th PGUE, Estremoz, Portugal. http://jphorta.site40.net/CJIGPGUE_horta_etal.pdf

7. Matias A (2013) Monitorização de riscos costeiros em ilhas barreira. 1º Workshop Internacional sobre Monitorização da Zona Costeira, Porto, Portugal, Fevereiro 2013.

8. Matias A, Masselink G, Kroon A, Carrasco AR, Blenkinsoop C, Turner I (2013) Comparative results of laboratory experiments of overwash threshold on gravel and sandy barriers. 2ª Conferência sobre Morfodinâmica Estuarina e Costeira, Aveiro, Portugal, Maio 2013.

9. Oliveira S, Boski T, Moura D, Sousa C, Gomes A, Pereira L (2013) Interactive multimedia application of Ria Formosa (Portugal) for educational purposes (FORDID). II International Conference on Illustration & Animation (CONFIA), Porto, 2013.

10. Palma P, Köck-Schulmeyer M, Ledo L, Barbosa IR, López de Alda M, Barceló D, Alvarenga P (2013) Variabilidade da qualidade da água na Albufeira do Alqueva. Seminário “Ecotoxtools: Ferramentas ecotoxicológicas usadas na avaliação de risco ambiental, caso-estudo Albufeira do Alqueva. IPBeja-ESAB, 11 de dezembro, 2013, Beja.

11. Reis R, Gabriel S, Fortes CJEM, Moura D (2013) Aplicação do modelo SWAN na caracterização da agitação marítima com base em dados de campo: Praia da Galé. 2ª Conferência sobre morfodinâmica estuarina e costeira, Universidade de Aveiro, 9-10 Maio. http://jphorta.site40.net/RReis_etal_Resumo_MEC2013.PDF

12. Reis R, Gabriel S, Fortes CJME, Moura D (2013) Contribuição para a caracterização da agitação marítima na Praia da Galé com base em dados de campo e modelação numérica. 8as Jornadas Portuguesas de Engenharia Costeira e Portuária, Lisboa, 1-20. http://jphorta.site40.net/RReis_etal_8thJPECP2013.pdf

13. Reis MP, Costa C, Caetano S, Ledo L, Rodrigues M, Palma P (2013) Dinâmica do fitoplâncton na albufeira de Alqueva e avaliação do estado trófico. Seminário “Ecotoxtools: Ferramentas ecotoxicológicas usadas na avaliação de risco ambiental, caso-estudo Albufeira do Alqueva. IPBeja-ESAB, 11 de dezembro, 2013, Beja.

14. Reis MP, Ledo L, Barbosa IR, Köck-Schulmeyer M, Costa C, Caetano S, Rodrigues M, López de Alda M, Alvarenga P, Barceló D, Palma P (2013) Avaliação de risco ambiental da Albufeira do Beliche. Seminário “Ecotoxtools: Ferramentas ecotoxicológicas usadas na avaliação de risco ambiental, caso-estudo Albufeira do Alqueva. IPBeja-ESAB, 11 de Dezembro, Beja.

15. Rodrigues B, Chew DM, Jorge RCGS, Fernandes P (2013) História térmica do Grupo do Flysch do Baixo Alentejo, Zona Sul Portuguesa. Livro de actas da 9ª Conferencia anual do GGET-GP. Universidade de Évora, pp. 97-99.

16. Rodrigues B, Chew DM, Jorge RCGS, Fernandes P, Veiga-Pires C., Oliveira, JT (2013) Idades U-Pb de zircões detríticos do Grupo do Flysch do Baixo Alentejo, Zona Sul Portuguesa. Livro de actas da 9ª Conferencia anual do GGET-GP. Universidade de Évora, pp. 101-102.

http://jphorta.site40.net/CJIGPGUE_horta_etal.pdf

http://jphorta.site40.net/RReis_etal_Resumo_MEC2013.PDF

http://jphorta.site40.net/RReis_etal_8thJPECP2013.pdf


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17. Sampath DMR, Boski T (2013) An assessment of significance of the uncertainty in sea-level rise on habitat translation in the Guadiana estuarine system IN THE 21ST CENTURY, 2ª Conferência sobre morfodinâmica estuarina e costeira, Uni. Aveiro, 9-10 Maio 2013, Portugal.

C - Relatórios (5)

1. Costa ME (2013). Final Report of Alfaetílico Project (Nº3397). Programa QREN - Sistema de Incentivos I&DT/Medida Co-Promoção

2. Cravo A, Damião T (2013) Programa de monitorização do Aeroporto de Faro –Fase de Construção (2010-2013). Componente águas superficiais e fitoplâncton. 3º Relatório anual- Julho 2012 a Junho 2013. Universidade do Algarve.

3. Cravo A, Damião T (2013). 4º Relatório de Progresso do Programa de Monitorização do Aeroporto de Faro. Fase de Construção (2010-2013). Componente águas superficiais e fitoplâncton. Universidade do Algarve. Novembro 2013

4. Icely J, Cristina S, Goela P, Moore G, Danchenko S, Zacarias M, Newton A (2013) Summary of the project outputs between 2008-2012 for Technical Assistance for the Validation of MERIS Marine Products at Portuguese Oceanic and Coastal Site. Final Report, May 2013, Annex A 81 pp., Data - Tables 102 pp., Annex B - Dissemination and Education 6pp. and copies of posters & publications.

5. Reis R, Fortes J, Gabriel S, Moura D (2013) Aplicação do modelo SWAN na caracterização da agitação marítima: Praia da Galé. 62 p. http://hdl.handle.net/10400.1/2635.

D - Organização de seminários e conferências (13)

1. Bebianno MJ (2013). 17th Congress on Pollution Responses in Marine Organisms (PRIMO17). May 5th-9th 2013. Universidade do Algarve (Portugal). President of the Organizing committee. http://www.cima.ualg.pt/primo17

2. Bidarra J, Figueiredo M (2013). Workshop em Ensino Online (WEO13). Universidade do Algarve (Portugal). June 27th-28th, 2013. Organizers of this seminar.

3. Chícharo L (2013). Ecohydrology, Biotechnology and Engineering: Towards Harmony between the Biogeosphere and Society on the basis of Long-Term Ecosystem Research. September 17th-19th 2013. Lodz (Poland). Member of the Steering Committee.

4. Matias A (2013) 2ª Conferência sobre morfodinâmica estuarina e costeira. May 9th-10th 2013. Universidade de Aveiro (Portugal). Member of the organizing committee.

5. Morais P (2013) Introduction to R. Porto (Portugal). February 25th to March 1st 2013. Organizer of this statistics course.

6. Morais P (2013) Organizer of “CIMA’s Advanced Seminars”. 16 seminars were organized from April until December 2013. http://www.cima.ualg.pt/cimaualg

7. Morais P (2013) The relevance of biological invasions on ecosystem functioning. Organizer and chairman of this session held at the 22nd Biennial Conference of the Coastal & Estuarine Research Federation. November 6th 2013. San Diego (USA). http://www.sgmeet.com/cerf2013/anthropogenic_facilitation.asp


http://www.cima.ualg.pt/primo17

http://www.cima.ualg.pt/cimaualg

http://www.sgmeet.com/cerf2013/anthropogenic_facilitation.asp


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8. Newton A (2013) ECSA53 Symposium. 13th-17th October 2013. Shanghai (China). Invited chairperson and co-chair session: “Economic development and ecological and socio-cultural risks: the socio-cultural-economic-ecology interface”. http://www.estuarinecoastalconference.com/

9. Newton A (2013) Fare I conti con l’ Ambiente. September 25th-27th Ravenna (Italy). Session Chair. http://www.labelab.it/ravenna2013/.

10. Newton A (2013) VI EUROLAG & VII LAGUNET Conference: “Coastal lagoon domain and properties: from fundamental research to policy implementation”. December 16th-19th 2013. Lecce (Italy). Member of the science steering committee and session chair. http://www.euromedlag.eu/conference

11. Newton A (2013). International Coastal Symposium (ICS). 8th-12th April 2013. Plymouth University (UK). Member of the scientific board committee and co-chair of the session “Coastal Ecology and Pollution”. http://ics2013.org

12. Palma P (2013) Ecotoxtools: Ferramentas ecotoxicológicas usadas na avaliação de risco ambiental, caso-estudo Albufeira do Alqueva. Seminar organized within the framework of the project EcotoxTools (PTDC/AAC-AMB/103547/2008) December 11th 2013. IPBeja/ESA (Portugal). Organizer of this seminar.

13. Palma P, Pardal A (2013) Principios de la evaluación de riesgo ambiental de químicos en el marco de la unión europea. Seminar organized within the framework of the Erasmus Program with Universidade de Extremadura (Spain). September 26th 2013. IPBeja/ESAB (Portugal). Organizers of this seminar.

E - Formação avançada

Teses de Doutoramento (8)

1. Camacho DS (2013) Modelo de zonação ecológica dos foraminíferos bentónicos e tecamebas do estuário do Rio Guadiana e sua aplicação na reconstituição paleoambiental. Universidade do Algarve. Supervisor: T Boski

2. Gomes T (2013) Efeitos da exposição de nanoparticulas na espécie Mytilus galloprovincialis. Universidade do Algarve. Supervisor: MJ Bebianno

3. Gonzalez J (2013) Association between medications and urinary pH. Universidade de Huelva (Spain). Co-supervisor: MJ Bebianno.

4. Gonzalez-Rey M (2013). Effect of active pharmaceutical ingredients in Mytilus galloprovincialis. Universidade do Algarve. Supervisor MJ Bebianno

5. Lazzara R (2013) New insights into the use of zebra mussel (Dreissena polymorpha) in aquatic toxicology studies. Faculty of Biology, University of Barcelona. Co-supervisor: D Fernandes

6. Lopes G (2013) Investigação em Palinologia e Isótopos Estáveis do Paleozóico da Zona Centro Ibérica (Buçaco, Dornes, Mação e Portalegre) e Zona de Ossa-Morena (Toca da Moura e Barrancos). Implicações Paleogeográficas e Paleoambientais. Universidade do Algarve. Supervisor: ???

7. Nunes FF (2013) Assinatura de expressão proteica de ostras do pacífico Crassostrea gigas contaminadas in situ por esgoto sanitário. Universidade Federal de Santa Catarina (Brasil). Co-supervisor: MJ Bebianno.

http://www.estuarinecoastalconference.com/

http://www.labelab.it/ravenna2013/

http://www.euromedlag.eu/conference

http://ics2013.org/


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8. Torre A (2013). Effects of CdCl2 on digestive gland of mussels evaluated by regulation of cellular volume and proteomic analysis . Biology and cellular biotechnologies. University of Messina (Italy), Co-supervisor: MJ Bebianno.

Teses de Mestrado (16)

1. Basos N (2013). GIS as a tool to aid pre- and post-processing of hydrodynamic models. Application to the Guadiana Estuary. University of Algarve (Portugal).

2. Batista J. (2013) Avaliação sensorial da frescura de produtos da pesca através do método QIM (Quality Index Method): revisão dos métodos desenvolvidos nos últimos 20 anos. University of Algarve (Portugal).

3. Freitas CLS (2013) Ecological evaluation of Algarve streams. University of Aveiro (Portugal). 4. Guerra L (2013) Efeitos da embalagem em ar, sob vácuo e em atmosfera modificada sobre a

qualidade de filetes de peixe-porco Balistes capriscus. University of Algarve (Portugal). 5. Guerreiro F (2013) Influência da transferência de massa de oxigénio na acumulação de lípidos

pela levedura Rhodosporidium toruloides. University of Algarve (Portugal) Supervisors: S Raposo & ME Lima-Costa.

6. Livramento J (2013). Central microhídrica incorporada em conduta. Mestrado em Energias Renováveis e Gestão de Energia da University of Algarve (Portugal).

7. Madeira H. (2013). Utilização de macroalgas verdes como biorremediadores em efluentes de indústrias agroalimentares: dinâmica das vias metabólicas relacionadas com os compostos azotados. University of Algarve (Portugal).

8. Masche S (2013). Population dynamic and geochemistry of benthic foraminifera at the intertidal mudflat of Northern Germany. University of Algarve (Portugal).

9. Melo J (2013) Produção de "single cell oil" com Yarrowia lipolytica: Selecção de meios de cultura". University of Algarve (Portugal).

10. Mota F (2013). Estudo da deterioração da amêijoa-boa Ruditapes decussatus (Linnaeus, 1758). University of Algarve (Portugal).

11. Mourinha C (2013) Caracterização físico-química e ecotoxicológica de resíduos orgânicos com potencial interesse para valorização agrícola”. Instituto Politécnico de Beja (Portugal).

12. Nunes A (2013) Produção de biodiesel a partir da cultura de microalga Chlorella sp. University of Algarve (Portugal).

13. Perez R. (2013). Arid groundwater dependent ecosystem response to salinization processes in a coastal aquifer: deriving vegetation indicators of the aquifer condition. University of Algarve (Portugal).

14. Rubio MB (2013) Efectos de la drospirenona en el metabolism y la expresión génica de lubina (Dicentrarchus labrax). University of Barcelona (Spain).

15. Santos M (2013). Certificação na aquacultura offshore de moluscos bivalves- Modelo de estudo: cultivo de mexilhão, Finisterra S.A. (Sagres). University of Algarve (Portugal).

16. Venancio AN (2013). Influência de plumas de água doce na hidrodinâmica do estuário da Ria de Arousa (NW Espanha): Uma abordagem de modelação matemática. University of Algarve (Portugal).


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Outras (10)

Researcher contract:

1. D’Alimonte D (2013). Concurso Investigador FCT 2013.

BSc Thesis

1. Duarte T (2013) Caraterização da resposta fisiológica e molecular de Carpobrotus edulis a stress hídrico e salino. University of Algarve (Portugal).

2. Hill B (2013) Physiological characterization and preliminary gene expression profiling of Coccomyxa sp. isolated from acid mine water. University of Algarve (Portugal).

3. Mariana Val (2013) A influência das condições nutricionais e operacionais na produção de lípidos, a partir levedura Rhodosporidium toruloides. University of Algarve (Portugal)

4. Pinto A (2013) Produção de bioetanol a partir de resíduos industriais de alfarroba. Estudo da cinética de inibição dos compostos tóxicos furfural e hidroximetilfurfural. University of Algarve (Portugal).

5. Raposo A (2013) Molecular Identification of Poliextremophilic Photossintetic Eukariots from Acid Mine Waters. University of Algarve (Portugal).

6. Salvador L (2013) Morfologia e Filogenia de cinco espécies de Narcissus presentes no Barrocal Algarvio. University of Algarve (Portugal).

7. Starkey R (2013) Produção de bioetanol, em reator biológico, com recirculação de células, a partir de resíduos industriais de alfarroba. University of Algarve (Portugal).

Students’ Research Project

1. da Fonseca TG (2013) Efeito de nanopartículas de Cu em amêijoas Ruditapes decussatus, expostas a sistemas de água e sedimento. University of Algarve (Portugal) within the framework of “Programa Ciência sem Fronteiras (Brasil)”.

2. Tuncsoy M (2013). Effect of Copper nanoparticles in the clam Ruditapes decussatus. University of Cukurova (Turkey).

F - Modelos (5)

Martins F (2013) Operational ocean modelling system for the Algarve coast.

Martins F (2013) Operational wave propagation modelling system for the Algarve coast.

Martins F (2013) Operational oil spill forecasting System for the Algarve coast.

Martins F (2013) High resolution water quality model for Ria Formosa.

Martins F (2013). Development of the 3D version of the numerical 2D model FLEX.

G - Aplicações computacionais (2)

1- 3D WEBGIS – CAVE VISUALIZATION: 3D digital mapping of caves with laser scanning technology, freely available through a WebGIS which allows queries on speleothem structures as well as to


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outline geomorphological structures on different spatial scales. http://193.136.227.170/sipclip/web3d.php. Additional information can be found in: Silvestre I, Rodrigues JI, Figueiredo M, Veiga-Pires C (2013) Framework for 3D data modeling and Web visualization of underground caves using open source tools”. In Proc. of the 18th International Conference on 3D Web Technology, pp. 121-128.

2- TOPTRI – TOPOLOGICAL MODEL FOR TRIANGLE MESHES: The TopTri (Topological model for Triangle meshes) toolkit for web 3D servers builds the topological model for triangular meshes of manifold or non–manifold models. Web 3D client applications using this toolkit make queries to the web server to get adjacent and incidence information of vertices, edges and faces. Additional information can be found in: Figueiredo M, Rodrigues JI, Silvestre I, Veiga-Pires C (in press) A topological framework for interactive queries on 3D models in the Web. The Scientific World Journal. http://www.hindawi.com/journals/tswj/aip/920985 and http://w3.ualg.pt/~mfiguei/toptri.php.

H - Instalações piloto (0)

I - Protótipos laboratoriais (0)

J - Patentes (0)

L - Outros (1)

Participation in the 1st edition of the contest “Mitose: Ciência a Sul”, by offering two internships to high school students (February 11th-13th 2013)- Stefanie Gue

8. Equipamento

Equipamento Nº Fatura /

Recibo Data Observações Valor c/ IVA

1 Computador Box 3610 Intel CORE i7-3770

3.4G; 1 Monitor TFT 23.6" 1626/2013 15-03-2013

1.431,72

Computador portátil 3849 08-11-2013

800,00

B_Rato s/ fio HP, ref.3024454 3085034095 18-06-2013

9,57

Monitor ACER G226HQLBBD 21,5 16:9FHD

LED 3085033873 27-05-2013

135,40

9. Ficheiros Anexos (opcional)

http://193.136.227.170/sipclip/web3d.php

http://www.hindawi.com/journals/tswj/aip/920985

http://w3.ualg.pt/~mfiguei/toptri.php


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Nome Ponto do RF

CIMA_Unidade0350_POE_4.Equipa de Investigação_31.12.2012.pdf

4. Equipa de Investigação_31.12.201

CIMA_Unidade0350_POE_ 6.Publicacoes2013 (categorias B a L).pdf

6.Publicacoes2013 (categorias B a L

CIMA_Unidade0350_POE_ 6.Publicacoes 2011-2012.pdf

6.Publicacoes 2011-2012.pdf

http://www.fct.mctes.pt/FCTAnexos/FCT_PROJECTOS_RFFICHEIROS/2004_123563/8149/CIMA_Unidade0350_POE_4.Equipa%20de%20Investiga%C3%A7%C3%A3o_31.12.2012.pdf

http://www.fct.mctes.pt/FCTAnexos/FCT_PROJECTOS_RFFICHEIROS/2004_123563/8149/CIMA_Unidade0350_POE_%206.Publicacoes2013%20%28categorias%20B%20a%20L%29.pdf

http://www.fct.mctes.pt/FCTAnexos/FCT_PROJECTOS_RFFICHEIROS/2004_123563/8149/CIMA_Unidade0350_POE_%206.Publicacoes%202011-2012.pdf

projeto estratégico relatório científico final · 2016. 12. 16. · projeto estratégico...

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