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DEPARTAMENTO DE CIÊNCIAS DA VIDA FACULDADE DE CIÊNCIAS E TECNOLOGIA UNIVERSIDADE DE COIMBRA Effects of extreme weather events and large scale factors in the population of Crangon crangon (L.1758) in the Mondego estuary David Garrido Dinis 2011 David Dinis Effects of extreme weather events and large scale factors in the population of Crangon crangon (L.1758) in the Mondego estuary 2011

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DEPARTAMENTO DE CIÊNCIAS DA VIDA

FACULDADE DE CIÊNCIAS E TECNOLOGIA UNIVERSIDADE DE COIMBRA

Effects of extreme weather events and large scale factors in the population of Crangon crangon (L.1758) in the Mondego estuary

David Garrido Dinis 2011

Dav

id D

inis

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Mon

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estu

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2011

DEPARTAMENTO DE CIÊNCIAS DA VIDA

FACULDADE DE CIÊNCIAS E TECNOLOGIA UNIVERSIDADE DE COIMBRA

Effects of extreme weather events and large scale factors in the population of Crangon crangon (L.1758) in the Mondego estuary

David Garrido Dinis 2011

Dissertação apresentada à Universidade de Coimbra para cumprimento dos requisitos necessários à obtenção do grau de Mestre em Ecologia Aplicada, realizada sob a orientação científica do Professor Doutor Miguel Pardal (Universidade de Coimbra)

! III!

Agradecimentos

A realização deste trabalho não é meramente resultado de um esforço

individual mas sim com a ajuda e apoio de várias pessoas, às quais quero

deixar aqui o meu especial agradecimento.

Ao Professor Doutor Miguel Pardal por me ter deixado entrar num excelente

grupo de trabalho, pela sua orientação científica, disponibilidade e apoio como

meu orientador, mas também pela amizade, paciência e exigência. Obrigado.

Ao Filipe, Ivan e Marina, pessoas que sem dúvida tornaram este trabalho

possível, sempre prontos a partilhar todo o seu conhecimento científico,

sabedoria, amizade e motivação. Por todas as horas de trabalho passadas e

por toda a ajuda, muito obrigado.

Quero agradecer a todas as pessoas do CFE pelo bom ambiente e convívio

que houve e também ao pessoal do IMAR que tornaram melhor todo este

percurso.

Um muito obrigado ao João que foi sem dúvida um amigo fundamental para a

realização desta tese, todo o apoio e incentivo muito obrigado! Obrigado

também ao resto do pessoal Joana Lucas, Ana Varela, Pedro, Rodolfo e muitos

outros que podiam ficar esquecidos se escrevesse a todos.

! IV!

À Marta por tudo o que me deu neste percurso, sugestões, força, apoio e

preocupação. Mas essencialmente por seres para mim quem és. Obrigado.

À minha família, base para tudo na minha vida mas em especial aos meus pais

e irmão, pois sem vocês não estava aqui. Um muito obrigado por tornarem isto

possível.

Para o meu avô João.

! V!

Resumo

Os estuários são usados como zonas de viveiro para uma grande

quantidade de espécies, estando sujeitos a constantes pressões

antropogénicas e ambientais. O objectivo deste trabalho foi verificar em que

medida os eventos climáticos extremos e factores de larga escala influenciam a

população de Crangon crangon no estuário do rio Mondego.

A monitorização no estuário decorreu de Junho de 2003 a Julho de 2010

com uma periodicidade mensal até 2006 e posteriormente bimensal, com

recurso a um arrasto de vara de 2 m, em cinco estações de amostragem ao

longo do gradiente de salinidade.

Entre 2003 e 2010 existiram períodos de seca, períodos de chuva

intensas e ondas de calor, que influenciaram as descargas de água doce no

estuário, tendo sido considerados de seca extrema os anos de 2005, 2007 e

2008. Durante este período, foram observados picos de densidades de juvenis

duas vezes por ano (verão e inverno). A população de C. crangon no estuário é

essencialmente constituída por juvenis e indivíduos adultos até um ano e meio.

Tendo em conta as densidades de C. crangon, os principais picos ocorreram

na primavera e verão e maioritariamente no braço Norte do estuário, tendo sido

o valor mais alto em Junho 2003 (134 indivíduos 1000m-2).

A produção secundária teve o seu valor mais elevado no ano de

2003/2004 (3.45 mg AFDW m-2 y-1) e o valor mais baixo no ano de 2007/2008

(0.62 mg AFDW m-2 y-1). Os valores da relação P/! obtidos foram mais baixos

nas comparado com outras populações existentes mais a norte.

! VI!

Apesar de não terem sido observadas alterações nos padrões de

recrutamento e de produção secundária, foram observadas alterações

espaciais no estuário, nomeadamente no local de fixação dos juvenis, visto

estes serem os que apresentam maior capacidade de osmorregulação,

conseguindo deslocar-se com mais facilidade no estuário até às zonas mais a

montante.

Foi também observado que os juvenis são os mais susceptíveis aos

factores ambientais de larga escala, nomeadamente a temperatura à superfície

da mar (SST), o índice NAO, o escoamento e a intensidade vento na

componente Norte-Sul. Em geral, a totalidade da população foi afectada

apenas pelo vento Norte-Sul, um indicador de eventos de afloramento costeiro.

Com este estudo, podemos concluir que a espécie de C. crangon, ao

contrário de outras espécies que vivem no estuário do Mondego, não sofreu

alterações significativas tendo em conta os factores climáticos extremos que se

verificaram durante o período em causa. No entanto, esta população, e

nomeadamente os juvenis, são influenciados em certa medida pelos factores

ambientais de larga escala, que condicionam o clima em Portugal continental.

Palavras-chave: Crangon cragon, eventos climáticos extremos, estuário do

Mondego, respostas populacionais

! VII!

Abstract

Estuaries are known for being nursery areas for a variety of species,

however, being subject of anthropogenic and environmental pressures, as

extreme weather events. The objective of this study was to assess how extreme

weather events and long-scale factors influence C. crangon populations in the

Mondego estuary.

The monitorization of the estuary was made from June 2003 to July 2010

with a monthly periocity until 2006 and after that bimonthly, by a 2m beam trawl

with a tickler chain and 5mm mesh-size in the cod end, in five sampling stations

along the salinity gradient.

Between 2003 and 2010 existed drought periods, heavy rain periods and

heat waves, which influenced runoff on the estuary, and the years of 2005,

2007 and 2008 were considered extremely dry. During this period, it was

observed density peaks of juveniles twice per year (summer and winter) being

the total density in the estuary higher in spring and summer. The C. crangon

population in the estuary is mainly composed by juveniles and adults up to one

and an half years.

Secondary production presented its highest value in the year of

2003/2004 (3.45 mg AFDW m-2 y-1) and the lowest in the year of 2007/2008

(0.62 mg AFDW m-2 y-1). The P/! ratio obtained were lower compared to those

obtained in other studies.

Despite not being observed modifications in the recruitment patterns and

secondary production, some spatial alterations in the estuary were observed,

! VIII!

mainly in the fixing spot of juveniles, as they were the ones with highest

osmorregulation capacity, being able to dislocate to the stations more upstream.

It was also noticed that juveniles are more susceptible to long-scale

environmental factors, mainly sea surface temperature (SST), NAO index,

runoff and north-south wind intensity. In general the total population was

affected by the north-south wind.

With this studie, we can conclude that C. crangon, unlike other species

that live in the Mondego estuary, did not suffer any significant alteration taking

into account the extreme weather events reported during the study period.

However, this populations, and mainly juveniles, are influenced at least to some

extent by environmental long-scale factors, that condition weather in continental

Portugal.

Keywords: Crangon cragon, extreme weather events, Mondego estuary,

population responses

! IX!

CHAPTER 1 – GENERAL INTRODUCTION 1

1.1. Estuaries 2

1.2. Mondego estuary 3

1.3. Global changes and extreme weather events 5

1.4. Brown shrimp Crangon crangon 6

1.5. Life cycle 7

1.6. Main objectives 8

CHAPTER 2 – MATERIALS AND METHODS 9

2.1. Sampling procedures and data acquisition 10

2.2. Sample analysis 11

2.3. Data analysis 12

CHAPTER 3 – RESULTS 15

3.1. Environment analysis 16

3.2. Population structure 23

3.2.1. General data 23

3.2.2. Abundance and secondary production 23

3.2.3. Population dynamics 25

CHAPTER 4 – DISCUSSION 29

4.1. Extreme weather events on coastal systems 30

4.2. Densities 31

4.3. Population distribution and dynamics 32

4.4. Parameters that influence the C. crangon. Reproduction, settlement and

recruitment 33

CHAPTER 5 – BIBLIOGRAPHIC REFERENCES 38

! 1!

Chapter 1

- GENERAL INTRODUCTION -

! 2!

1. General Introduction

1.1. Estuaries

Known as transition areas connecting the river and the marine system,

estuaries suffer permanent oscillations of temperature, oxygen, turbidity and

salinity from the brackish waters of the upper reaches to the euhaline

downstream areas. This salinity gradient combined with the normal typical

hydrodynamic fluctuations of freshwater flow and seawater invasion are

responsible for the distribution of the organisms in the estuary (Thiel et al.,

1995; Whitfield, 1999; Kimmerer, 2002; Leitão et al., 2007). That is why natural

variations like extreme weather events or man-made changes like dams or

dredging activities have such a huge impact on the estuarine species

(Kimmerer, 2002).

Due to their location, usually near big cities, the goods and services

provided by estuaries such as the tourism, recreational areas, protection

against floods, replenishment of coastal fisheries stocks, sediment and nutrient

cycling, among others, makes the estuaries a valuable ecosystem. All these

goods lead to intense human activity and as consequence the natural

environmental suffers dramatic changes (de Jonge et al., 2002; Dauvin &

Ruellet, 2009).

Another important characteristic of the estuaries is their role as nursery

and shelter areas, providing to the juveniles stages of many species high food

availability, favourable conditions for rapid growth and good survival and finding

refuge from predators (Beck et al., 2001).

Estuaries also have high levels of production (primary and secondary),

supporting a wide range of fishes and invertebrates (Beck et al., 2001). Due to

! 3!

all these features estuaries are placed among the most productive (Kennish,

2002; McLusky & Elliott, 2004; Dolbeth et al., 2007) and heavily populated

areas throughout the world (Nichols et al., 1986).

1.2 Mondego estuary

The Mondego estuary (40º08'N, 8º50'W) is a small estuary of 8.6 km on

the western coast of Portugal and a typical intertidal estuary (Lopes et al.,

2000). It comprises two arms (north and south) with very different hydrologic

features that separate at approximately 7 km from the shore and join again near

the mouth, being divided by the Murraceira Island.

The North arm is deeper, with 5 to 10 m depth at high tide and tidal range

of 2 to 3 m and constitutes the principal navigation channel and the location of

the Figueira da Foz harbour. The south arm is shallower, with 2 to 4 m depth at

high tide and tidal range of 2 to 3 m and it was silted up in the upstream areas

until 2006. Since 2006, the reestablishment of the communication between the

south and north arm led to an improvement in hydrodynamics and consequent

reduction of the residence time in the south arm (Neto et al., 20). Nevertheless,

freshwater flow is still carried mainly by the north arm. In the south arm the

circulation also depends on tides and on the relatively small freshwater input,

carried out through the Pranto River, a small tributary system, which is

regulated by a sluice, according to the water needs in the surrounding rice

fields. These characteristics make this arm particularly susceptible to

eutrophication due to the organic enrichment and low hydrodynamics. In the

south arm, about 75% of the total area consists of intertidal mudflats, while in

! 4!

the north arm they stand for less than 10% (Pardal et al., 2000, 2004; Marques

et al., 2003; Cardoso et al., 2004).

Presently anthropogenic pressure affects the Mondego estuary in several

ways. In the north arm there is the harbour and its maintenance and the

regularization of the river channel led to a rapid degradation in the area. The

northern arm receives the bulk of the discharge of the Mondego. The southern

arm is mostly controlled by the small Pranto River and tidal action (Marques et

al., 2007) suffering from raw sewage disposal and high nutrient inputs from

agricultural and fish farms in the upstream areas. Combined with a high water

residence time, this led to eutrophication processes, resulting in occasional

spring macroalgae blooms of Enteromorpha spp. over the past two decades

(e.g. Pardal et al., 2004; Dolbeth et al., 2007).

The Mondego estuary is an extensively studied system with published

works on fauna and flora, for instance ichthyoplankton (Ligia et al., 2011), fish

communities (Martinho et al., 2007), estuarine production (Dolbeth et al., 2007),

benthic food webs (Baeta et al., 2011), planktonic communities (Cotrim et al.,

2007), benthic species like Hydrobia ulvae or Scobicularia plana (Cardoso et

al., 2008) and macroinvertebrates like Carcinus maenas (Bessa et al., 2010)

and Crangon crangon (Viegas et al., 2007).

! 5!

Figure 1 – Mondego River estuary.

1.3 Global changes and extreme weather events

Despite all the concern about global changing and the consequences of

human impact in the environment, the emissions of greenhouse gases (GHG)

had been increasing in the atmosphere between 1970 and 2004 (~80%), and

the levels of carbon dioxide are at their highest level in at least 65,000 years

and continue to rise. This accumulation of GHG in the atmosphere will lead to

an increase of the global surface temperatures in about 1.1-6.4ºC by 2100 and

to several others problems associated, as the ocean acidification, sea level rise,

reduction in thickness and extent of glaciers, ice sheet and sea ice (IPCC,

2007).

As consequence extreme weather events will occur more often and with

higher intensity (Easterling et al., 2000; Alexander et al., 2006; Houghton,

2009), floods will be more regular (Santos et al., 2002), heat and cold waves

more frequent. Portugal suffered three severe drought periods in the last ten

! 6!

years (2003, 2005 and 2006) (Portuguese Weather Institute; Santos et al.,

2002) having a strong impact on coastal ecosystems, meaning that the normal

parameters of estuaries will change, provoking alterations on the reproduction

and recruitment patterns of estuarine species (Cardoso et al., 2007; Chainho et

al., 2007). There are some described cases of alteration in the Mondego

estuary due the extreme events on the H. ulvae, by wiping out part of its

population (Cardoso et al., 2008), decline on the macrobenthic communities,

degradation of the estuary (Cardoso et al., 2008), decline on the recruitment of

nursery species (Martinho et al., 2009) and compromises the restoration of the

estuary (Grilo et al., 2011).

1.4. Brown shrimp Crangon crangon

Crangon crangon (Linnaeus, 1758) belongs to the Decapoda order and

Crangonidae family. It has a wide distribution range along the Europe coast

from the White Sea in the north Russia to the Mediterranean and Black Seas

(Tiews, 1970; Gelin et al., 2000). It is present in Malta (Micaleff & Evans, 1968)

and Morocco (Campos & Van der Veer, 2008), within the latitude parallels of

34°N and 67°N (Mediterranean, temperate and cold climatic zones).

It has an important role on near-shore ecosystems for being a highly

abundant prey (Nehls & Tiedemann, 1993; Hampel et al., 2005) as well as a

predator (Norkko, 1998; Hiddink et al., 2002; Wennhage, 2002). As a prey it

plays an important role to some juveniles and adult fishes (McLusky & Elliot,

2004). On the Mondego estuary C. crangon is predated by several species with

relevant economic value as Platichthys flesus, Solea solea and Dicentrarchus

! 7!

labrax (Martinho, 2005) and is also an important benthic predator of other

species (Phil & Rosenberg, 1984; Beukema, 1992; Oh et al., 2001).

This species is commercially exploited and consequently it has been

intensively studied in terms of abundance and stock (Phil & Rosenberg, 1982;

Spaargaren, 2000; Siegal et al., 2005), fisheries by-catch and discards

(Berghahan et al., 1992; Berghahn & Purps, 1998; Gamito & Cabral, 2003) and

migratory behavior (Hartsuyker, 1966; Boddeke, 1976; Janssen & Kuipers,

1980). C. crangon is caught in estuaries and inshore areas of the countries

bordering the North Sea and has a market value between €50-70 million per

year (Polet, 2002; Anon, 2006). Along the years there have been some

oscillations in terms of landings but its highest catch occurred in 2006 – 37,000t

(Innes & Pascoe, 2007). In 1997 the estimate earnings were about 98.2 million

euros (Pascoe & Revill, 2004), and in 2006 about 91.3 million euros (Innes &

Pascoe, 2007).

1.5. Life cycle

The reproduction occurs in more saline waters offshore, usually in sandy

or muddy areas in a depth between 10-20m (Tiews, 1954; Henderson &

Holmes, 1987. The reproduction occurs almost continuously throughout the

year, with main spawning seasons in spring/summer (Viegas et al., 2007). The

growth is irregular due the rigid exoskeleton and therefore presents several

moultings (Smaldon et al., 1993). After the hatch of the eggs, a free-floating

planktonic larval stage migrates to coastal waters (van Donk & De Wild, 1981)

developing into benthic post-larvae that invade estuaries and shallow waters,

where they find abundant sources of food and grow (Tiews, 1970; Boddeke et

! 8!

al., 1976; Beukema, 1992). After six months in the estuary they start to be

reproductive active (Viegas et al., 2007), becoming adults and move to deeper

waters, where they reproduce.

1.6. Main objectives

Climate changes are expected to affect ecosystems in many ways and it

is essential to understand and predict the ecosystems’ responses to this new

source of stress. Taking this into account, the main objectives of this study were

to provide information on how climate changes, and consequently the extreme

weather events, will affect the C. crangon population in the Mondego estuary

and compare and extrapolate these changes to other ecosystems. Another goal

was to know with more detail which factors among the hydrological features,

namely coastal wind speed and direction, currents, salinity, turbidity, water

temperature precipitation and large ocean‐atmosphere patterns such as the

North Atlantic Oscillation (NAO), have significant influence on the reproduction,

settlement, recruitment patterns and distribution of C. crangon.

! 9!

Chapter 2

- MATERIALS AND METHODS -

! 10!

2. Materials and methods

2.1. Sampling procedures and data acquisition

Sampling was performed at five stations ranging from marine to

freshwater environments (Fig.2). Surveys took place monthly or every two

months from June 2003 to July 2010 (with exception for September-October

2004 and October-December 2008, due to technical constraints). Samplings

were made during the night, at high tide of spring tides due to better gear

efficiency.

The gear used was a 2 meters beam trawl with one tickler chain and 5

mm mesh size in the cod end. Three trawls were towed at each station for a

mean of 5 minutes each, covering at least an area of 500m2. Bottom water was

analyzed for salinity, temperature, pH and dissolved oxygen.

Hydrological data was obtained from INAG – Portuguese Water Institute

(http://snirh.inag.pt). Both monthly precipitation (from Jane 2003 to July 2010)

and long‐term monthly average precipitation (from 1961 to 1991) was obtained

from the Soure 13F/01G station. Freshwater runoff was acquired from INAG -

Portuguese Water Institute (http://snirh.inag.pt) station Açude Ponte Coimbra

12G/01A, near the city of Coimbra (located 40 km upstream).

North Atlantic Oscillation (NAO) Index (given by the pressure difference

between Lisbon (Portugal) and Reykjavik (Iceland) data was supplied by

NOAA/National Weather Service – Climate Prediction Center

(http://www.cdc.noaa.gov). Sea surface temperature (SST), wind data, both

north‐south and east‐west components, were acquired from the International

Comprehensive Ocean Atmosphere Data Set (ICOADS) online database

! 11!

(http://dss.ucar.edu/pub/coads, Slutz et al., 1985) concerning the 1º Lat x 1º

Long square nearest to the Mondego estuary.

Figure 2 – Location of the five sampling stations in the Mondego

estuary (M, N1, N2, S1 and S2).

2.2. Sample analysis

After sampling the shrimps were frozen and stored. Before analysis,

shrimps were unfrozen and preserved in 4% formaldehyde for 24 hours and

then transferred to 70% ethanol for long-term storage.

Carapace length (CL) was measured as the shortest distance between

the posterior margin of the orbit and the mid-dorsal posterior edge of the

carapace (to the nearest 0.01 mm using a binocular micrometer). The total

length (TL) was measured similarly from the posterior margin of the orbit to the

! 12!

tip of the telson. A regression between the CL and the TL was also used

(Viegas et al., 2007):

TL = 4.7906*CL-1.1295 (r2=0.98, N=702)

To determinate the sex three different morphological characteristics were

observed: the size and shape of the endopodite of the first pleopod and the

presence or absence of the appendix maculina. Shrimps with CL<3.5mm were

considered immature.

2.3. Data analysis

The population structure was defined by tracking recognizable cohorts

from successive sampling dates. Spatial samples were pooled together and

analyzed through size frequency distribution of successive sampling dates and

cohorts determined using FAO-ICLARM Stock Assessment Tools (FiSAT

software, provided in http://www.fao.org/fi/statist/fisoft/fisat/index.html). The

cohorts were identified using Bhattacharya’s and NORMSEP procedure, which

provided the mean length, standard deviation, population sizes and separation

indices for the identified age groups (Gayanilo et al., 2005).

After recognition of the cohorts, the annual production was estimated

with the cohort increment summation method (Winberg, 1971), according to:

!!" =!! + !!!!

2 × !!!! − !!!!!

!!!

where Pcn is the growth production (g WW m-2 y-1 ) of cohort n; N is the

density (ind m-2); ! is the mean individual weight (g WW m-2); t and t+1, are

consecutive sampling dates. Population production estimates correspond to the

sum of each cohort production (Pcn). Negative production values were not

! 13!

accounted for the overall shrimps estimates, which were regarded as no

production.

The mean annual biomass (!) was estimated according to:

! = 1! × (!!"

!!

!!!!!")

where T is the period of study, which is always 365 days (yearly cycles)

as the mean annual biomass is being computed; Nc is the number of cohorts

found in the study period; Bcn is the mean biomass (g WW m-2) of cohort n; tcn is

the time period of the cohort n (days), from the first appearance of individuals

until they disappeared.

The environmental data (precipitation, runoff, sea surface temperature,

estuarine temperature and salinity) was analyzed with Primer, with Principal

Components Analysis (PCA) after data normalized.

The shrimp population was analysed according to two distinct periods:

non-drought years and drought years, defined by reports of the Portuguese

Weather Institute (Portuguese Weather Institute 2010, www.meteo.pt) and

explored through PCA. The population density was divided into juveniles

(individuals!≤ 3.5 mm of CL) males, females and ovigerous females. This data

was explored using 2-way ANOSIM (from PRIMER routines) for the factors

season and year. This allowed to check if there were differences in the density

patterns for drought and non-drought periods. Previously, similarities in the

density data were calculated as the Bray-Curtis coefficient after square-root-

transformation of the raw data to scale down the scores of the most abundant

groups (Clarke & Warwick, 2001).

! 14!

The inter-annual relationship between the densities (juveniles and total

density) and the environmental patterns (predictors) were analyzed with a

Generalized Linear Model (GLM) in R software (R Development Core Team,

2008), where the number of shrimps is related to the environmental parameters.

The GLM was built with an additive methodology: environmental parameters

were tested independently for significance and subsequently, significant

parameters were added to determine the residual deviance, the percentage

explained by each parameter and the total percentage of the deviance

explained. Juvenile and total densities (the response variables) were modelled

as a function of salinity, runoff, precipitation, sea surface temperature, the North

Atlantic Oscillation, dissolved oxygen, wind north-south and wind east-west.

The final model was fitted only with the significant variables. For all the

variables, three distinct scenarios were tested, to the juveniles and to all the

population: one scenario with the parameters values matching with the density

months, other scenario the parameters are one months prior of the

corresponding month of density and a third one were the parameters are two

months prior, since, according the biology of the specie, the

oceanic/atmospheric factors can have a delay influence on the estuarine

colonization, mainly on juveniles and larvae, to the overall population, intrinsic

factors like salinity, temperature, runoff and wind can affect their abundance

and distribution. This approach has already been applied to the fish community

in the estuary (Martinho et al., 2007). A significance level of 0.05 was used in all

test procedures.

! 15!

Chapter 3

- RESULTS -

! 16!

3. Results

3.1. Environment analysis

The study period of seven-years revealed some atypical modifications on

the estuary. Several years of drought with reduced precipitation originated a

significant reduction in freshwater runoff into the estuary (Fig. 4). The hydrologic

years of 2003, 2006 and 2009 were considered as regular, while 2004, 2005,

2007 and 2008 (Fig. 3) were extremely dry years, being the hydrologic year

2004 (from June 2004 to May 2005) the one with the lowest values of

precipitation (422.6 mm against 892.2 mm for 1961–1991 mean, classified as

the worst drought since 1931 by the Portuguese Weather Institute). In autumn,

2006 the levels of precipitation were high, making the salinity levels drop to the

lowest levels during the study period (salinity value: 0) (Fig. 5), and the highest

levels of salinity were in 2007 and 2009, making the station more upstream with

almost the same value of salinity than the station M downstream (23 and 33

respectively).

Some heat waves occurred (Portuguese Weather Institute) in 2003, 2005

and 2009, being 2005 the driest year and the spring of 2009 the driest season

since 1931, affecting the average water temperature on the estuary (the highest

range of average water temperature was 8.8ºC in January and 22.7ºC in July, in

2005) and salinity (period of dry from March to October 2009). 2007 was the

year with the second lowest annual precipitation in the last 60 years

(Portuguese Weather Institute).

! 17!

Figure 3 – PCA with the environmental parameters along the study

period organized per year

!

Figure 4 – Long-term variation of precipitation and river runoff in the

Mondego River basin.

!

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l/10

Riv

er R

unof

f (da

m3)

Pre

cipi

tatio

n (m

m)

runoff precipitation avg (1961 - 1991)

! 18!

Figure 5 – Monthly variation of salinity at stations M (most

downstream station), N2 (most upstream station) and estuarine

average salinity values (A); and estuarine average temperature and

sea surface temperature (SST) for the 1º Lat x 1º Long nearest to the

Mondego estuary (B).

0.0 5.0

10.0 15.0 20.0 25.0 30.0 35.0 40.0

Jun-

03

Sep

-03

Dec

-03

Mar

-04

Jun-

04

Sep

-04

Dec

-04

Mar

-05

Jun-

05

Sep

-05

Dec

-05

Mar

-06

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06

Sep

-06

Dec

-06

Mar

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07

Sep

-07

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-07

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-08

Jun-

08

Sep

-08

Dec

-08

Mar

-09

Jun-

09

Sep

-09

Dec

-09

Mar

-10

Jun-

10

Salin

ity

M N2 Estuarine average

0.0

5.0

10.0

15.0

20.0

25.0

30.0

Jun-

03

Sep

-03

Dec

-03

Mar

-04

Jun-

04

Sep

-04

Dec

-04

Mar

-05

Jun-

05

Sep

-05

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-05

Mar

-06

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06

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-06

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-06

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07

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-07

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-08

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08

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-08

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-08

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Jun-

09

Sep

-09

Dec

-09

Mar

-10

Jun-

10

Wat

er te

mpe

ratu

re ºc

Estuarine average SST

A

B

! 19!

The Sea Surface Temperature (SST) ranged from 10ºC to 23.5ºC, with

the lowest value in March 2004 and the highest value in August 2006 (Fig. 5).

Considering north-south wind, the average values were negative in all

years (hydrologic year, from June to May) during the study period, which

contributed to the occurrence of upwelling, being the months of January 2005,

March 2006 and November 2008 with the most intensive wind from north to

south with values of -17 m s-1, -19.8 m s-1 and -14.5 m s-1 respectively. The year

of 2005 had the lowest value (-4.23 m s-1) and the year of 2008 the nearest zero

value (-0.89 m s-1).

The NAO index reveal to be more near to null values, however almost all

years had negative values between -0.93 and -0.041 except the year of

2003/2004 that had a positive value (0,18) (Fig. 6) The variation along the years

had been from -2.24 in October 2006 and 1.68 in May 2009.

!

A

-25 -20 -15 -10

-5 0 5

10

Jun/

03

Out

/03

Fev/

04

Jun/

04

Out

/04

Fev/

05

Jun/

05

Out

/05

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06

Jun/

06

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/06

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07

Jun/

07

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/07

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08

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08

Out

/08

Fev/

09

Jun/

09

Out

/09

Fev/

10

Jun/

10

m s

-1

Wind N-S

! 20!

Figure 6 – Environmental variables Wind north-south (A) and North

Atlantic oscillation index (B).

After knowing that there were no significant differences among the

hydrologic years (two-way Anosim R=0,164, p<0.001), the factors responsible

for the variations on population densities were assessed.

Among all the parameters tested to see if had some significance to

explain the distribution and recruitment of C. crangon, the ones that explain

some part of it are the Runoff, Wind north-south, sea surface temperature (SST)

and the North Atlantic Index (NAO). However they do not have the same impact

among all the population, some of them are significant for juveniles during

recruitment and others to the population in general.

The data was organized by the parameters corresponding to two months

earlier, one month earlier and the corresponding month of the changes.

B

-3 -2 -1 0 1 2

Jun/

03

Out

/03

Fev/

04

Jun/

04

Out

/04

Fev/

05

Jun/

05

Out

/05

Fev/

06

Jun/

06

Out

/06

Fev/

07

Jun/

07

Out

/07

Fev/

08

Jun/

08

Out

/08

Fev/

09

Jun/

09

Out

/09

Fev/

10

Jun/

10

NAO

! 21!

Table I – Analysis of deviance table for the gamma-based GLM fitted

to the total densities and juveniles densities (Res. Dev. – Residual

deviance; % Expl. – Percentage of the deviance explained by the

model).

Parameters

Date of environmental

parameters p-value Res. Dev. Deviance % Exp.

Densities of Juveniles

Runoff same month 0.00629 24.11 36.13 33.27

Wind N-S same month 0.04239 26.52 36.13 26.61

SST 1 month prior 0.0431 27.842 36.13 22.94

SST 2 months prior 0.0319 27.629 36.13 23.53

NAO 2 months prior 0.00238 24.287 36.13 32.78

Total Dens. Wind N-S same month 0.036 12.47 14.63 14.77

Considering the juvenile population, the runoff explained 33.27% of the

densities, highest runoff, biggest are the densities of juveniles in the estuary,

and with the wind north-sout explained 26.61% of the density, telling that values

nearest zero are the best to recruitment (Table 1; Fig. 7). The SST explained

22.94% and the increases in temperature were beneficial to the juveniles

densities (at least to some extent) (Fig. 8 and 9). The NAO index showed that

negative values are more favourable to the juveniles (Fig.9), and explained

32.78%. To the general population only the wind north-south had a significant

influence explaining 14.77% of the density (Fig.10).

! 22!

0

10

20

30

0 10 20 30

ind.

100

0m-2

Sea Surface Temperature (oc)

0

10

20

30

0 10 20 30

ind.

100

0m-2

Sea Surface Temperature (oc)

0 5

10 15 20 25 30

0 400000 800000

ind.

100

0m-2

River runoff (dam3)

0 5

10 15 20 25 30

-3.00 -1.00 1.00 3.00

ind.

100

0m-2

NAO index

Figure 7 – Abundance of juveniles C. crangon (Ind. 1000 m-2) in

relation with (A) river runoff (dam3), (B) wind N–S component (m s-1)

concerning the month of the densities values.

Figure 8 – Abundance of juveniles C. crangon (Ind. 1000 m-2) in

relation with sea surface temperature (ºC) concerning one month

prior of the densities values.

Figure 9 – Abundance of juveniles C. crangon (Ind. 1000 m-2) in

relation with (A) sea surface temperature (ºC), (B) NAO index

concerning two month prior of the densities values.

0 5

10 15 20 25 30

-25 -15 -5 5 15

ind.

100

0m-2

Wind N-S ( m s-1)

A

A

B

B

! 23!

D

Figure 10 – Abundance of C. crangon (Ind. 1000 m-2) in relation with

wind N–S component (m s-1) concerning the month of the densities

values.

3.2. Population structure

3.2.1. General data

During the study were caught a total of 21417 individuals, 8011 of them

were juveniles, 5098 males, and 8308 females (405 berried females). Most of

them were caught on the stations M and N2 (43.5% and 28.4% respectively.

The smaller juveniles, corresponding to the post-larvae stage, had 1.23mm CL

(5mm TL), the biggest one was a female with 15.00mm CL (70.7mm TL) caught

on February 2010, and the biggest male had 9.14mm CL (42.6mm TL) caught

on November 2009.

3.2.2. Abundance and secondary production

C. crangon reached higher densities mainly on the spring and summer,

presenting highest values in June 2003, April 2004 and July 2005 (134, 112 and

79 individuals per 1000m-2, respectively), staying the rest of the study period

more constant in about approximately 50 individuals per 1000m-2 with two peaks

0 20 40 60 80

100

-25.00 -15.00 -5.00 5.00 15.00

Ind.

100

0 m

-2

Wind N-S (m s-1)

! 24!

per year, in spring and summer. The north arm was the most responsible for

these density peaks (Fig. 11).

The secondary production (Fig. 11) had peaks more defined than the

density peaks, occurring mainly in winter (December) and summer (July)

however there were some peaks in spring too (April and May), matching with

the juvenile peaks.

0 20 40 60 80

100 120 140 160

Jun/

03

Set

/03

Dez

/03

Mar

/04

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04

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/04

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/10

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Den

sity

(ind

. 100

0 m

-2)

0 10 20 30 40 50 60 70 80

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/03

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/09

Dez

/09

Mar

/10

Jun/

10 D

ensi

ty (i

nd.1

000m

-2)

A

B

! 25!

Figure 11 – Density variation (A), juveniles’ density variation (B) and

secondary production (C), in the estuary.

3.2.3. Population dynamics

The number of juveniles was higher in the stations of the north arm,

having the biggest percentage on the M station (35% of all the juveniles along

the study period). However there were some exceptions, for example in 2005

there were more juveniles on the station N2, and after June 2007 the number of

juveniles were almost the same on both north arm stations, being the main

influence on the densities observed in the estuary during the reproduction

season. There are two peaks of juveniles per year, one bigger on the summer

and other with smaller values in the winter (Fig. 12).

0 0.2 0.4 0.6 0.8

1 1.2 1.4

Jun/

03

Set

/03

Dez

/03

Mar

/04

Jun/

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07

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08

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/08

Mar

/09

Jun/

09

Set

/09

Dez

/09

Mar

/10

Jun/

10 m

g A

FDW

m-2

mon

th-1

C

! 26!

Figure 12 – Number of juveniles (CL < 3.5 mm) per 1000 m2 on the

five sampling station along the study.

!

!Figure 13 – Crangon crangon estimated growth for each cohort (all

sampling stations combined) during the study period.

0 10 20 30 40 50 60 70 80 90

100

Jun/

03

Set

/03

Dez

/03

Mar

/04

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Jun/

10

Ind.

100

0m -2

M S1 S2 N1 N2

N2!187

M!197

M!318

Drought +

Heat wave Heat wave

Heavy rains

Heat wave

Drought

Heat wave

0

2

4

6

8

10

12

14

Jun/

03

Sep

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Jun/

10

CL

(mm

)

! 27!

The appearance of juveniles in the estuary were mainly twice per year,

one on the months of November and December and another on February,

March and April (Fig. 13). This appearance is usually few months before the

density peaks. They grow on the estuary during two years into the size of

approximate 10mm CL, however there are some rare cases of adults that get

into the estuary, having a CL around 13mm not making parte the normal

population in the estuary.

The growth rate is almost the same between the two periods of

recruitment, having the individuals of the cohorts of Autumn-Winter 6.45mm CL

±0.37(29.8mm TL) after one year and the individuals of the spring cohorts

6.21mm CL ±0.23 (28.6mm TL). The maturations (CL ≥3.5mm) occur after six

months in the estuary.

Figure 14 – Number of berried females per 1000 m2 on the five

sampling station along the study.

0!1!2!3!4!5!6!7!

Jun-

03

Sep

-03

Dec

-03

Mar

-04

Jun-

04

Sep

-04

Dec

-04

Mar

-05

Jun-

05

Sep

-05

Dec

-05

Mar

-06

Jun-

06

Sep

-06

Dec

-06

Mar

-07

Jun-

07

Sep

-07

Dec

-07

Mar

-08

Jun-

08

Sep

-08

Dec

-08

Mar

-09

Jun-

09

Sep

-09

Dec

-09

Mar

-10

Jun-

10

Ind.

100

0 m

-2

M! S1! S2! N1! N2!

N1 N1 M N1 19 25 10 17

Drought +

Heat wave

Heavy rains

Heat wave

Heat wave

Drought

Heat wave

! 28!

The berried females had some peaks of density (Fig. 14), mainly on the

months with higher temperature. There were five peaks on the station N1 on the

months of June and July of the year’s 2003, 2005, 2006, 2009 and 2010, two on

the station S1 in July 2004 and May 2005, and during the cold months they stay

on the station M, on March 2007 January 2008 and February 2009.

Table II – Year variation of production (P), biomass (B) and P/! ratio

along the seven years of the study period, for the C. crangon, and

corresponding weather events.

hydrologic year

P (mg AFDW m-2 y-1)

B (mg AFDW m-2 y-1)

P/B (mg AFDW m-2 y-1) weather event

2003/2004 3.45 0.85 4.08 Regular 2004/2005 1.43 0.27 5.29 Drought 2005/2006 1.72 0.49 3.48 Drought + Heat wave 2006/2007 2.39 0.65 3.70 Regular 2007/2008 0.62 0.22 2.83 Drought 2008/2009 1.65 0.28 5.93 Drought 2009/2010 2.15 0.56 3.82 Regular

The annual secondary production (P) of the population of C. crangon was

estimated with values between 3.45 mg AFDW m-2 year-1 in 2003/2004 and 0.62

mg AFDW m-2 year-1 in 2007/2008. The annual biomass (!) had values between

0.85 and 0.22 mg AFDW m-2 year-1 giving a relation P/! of 3.4 and 0.62.

! 29!

Chapter 4

- DISCUSSION -

! 30!

4. Discussion

4.1. Extreme weather events on coastal systems

Costal ecosystems are subjected to several anthropogenic stressors and

usually they interact with each other, having an impact on biodiversity and

ecosystem function (Vinebrooke et al., 2004; Dolbeth et al., 2007). Besides

loading impacts such as eutrophication and more recently the recovery phase of

the Mondego estuary, this estuary has been suffering the effect of extreme

weather events that occurred with more frequency and intensity during the last

decade. The drought periods have a huge impact on the aquatic system by

reducing the flow of freshwater in the estuaries (Tallaksen et al., 1997).

C. crangon unlike other species on the Mondego estuary like the Solea

lascaris (Martinho et al., 2007), Hydrobia ulvae (Cardoso et al., 2008),

Scobicularia plana (Cardoso et al., 2008) and Carcinus maenas (Bessa et al.,

2010) did not seem to have suffered any significant alteration along the study

period, having just some spatial adjustments. It is known that C. crangon can

live in temperatures between 6 and 30ºC (Abbott & Perkins 1977; Jeffery &

Revill 2002, Freitas et al., 2007), and in the study period it was only observed

minimum and maximum temperatures of 8.8ºC and 22.7ºC, respectively.

However, the salinity levels directly affect the temperature tolerance of C.

crangon (at low temperatures shrimps prefer high salinities, while at high

temperatures, low salinities are preferred) (Broekema, 1942). Nevertheless, the

mean salinity levels during the study period were never higher than 32 and

lower than 10.

! 31!

4.2. Densities

Densities varied along the period of study and presented peaks of

juveniles in October, November and December and in February, March and

April, which can be related to salinity values inside the estuary. Larvae are

polyhaline (Criales & Anger, 1986), which can suggest that they develop during

the months with low precipitation (therefore high salinity), which are the months

previous to the ones where cohorts appeared. As they take few months to enter

the estuary (Campos & Van der Veer, 2008), they start to appear in autumn and

winter months, as shown by the results.

In general, adult shrimps maintain constant densities in the estuary

(approximately 60 individuals per 1000 m2) along the years, however there are

some tendencies of placement within the estuary and some factors that can

explain a part of our density observations. It is known that there are important

factors that influence the recruitment of the juveniles such as the runoff, wind

north-south, sea surface temperature and the NAO index. However they have a

response on different times of the recruitment. Our observations indicate that

the SST and the NAO index influences the recruitment in an earlier stage and

the runoff and the wind north-south more directly. It is unclear if the larvae are

transported passively (Rijnsdorp et al., 1985) or if they are able to affect this

transport selectively (called selective tidal transport, as observed in flatfish

species) by swimming up from the seabed during flood tides and remaining on

the seabed during ebb tides (Rijnsdorp et al., 1985; Jager 1999). The results

indicate that they can have a selective transport.

! 32!

4.3. Population distribution and dynamics

The distribution of the specie along the estuary was according to the

different environmental characteristics of each station, being the principal

characteristics: temperature (Beukema 1979; Spaargaren 1980; Henderson &

Holmes 1987), salinity (Tiews 1970; Labat 1977a, b; Marques 1982; Henderson

& Holmes 1987; Gelin et al., 2001a, b), light intensity/day length (Spaargaren,

2000) and food conditions (Tiews, 1970; Boddeke, 1976; Spaargaren, 2000). By

affecting the physiological performance of shrimps, this parameters are also

responsible for the migration patterns, both tidally (Janssen & Kuipers, 1980),

daily (Hartsuyker, 1966) and seasonally.

The juveniles, males, females and berried females have different ranges

of optimal levels of salinity, temperature and O2. Males are less capable of

osmorregulating and thus tolerating lower levels of salinity (Lloyd & Yonge,

1947). Due to that, they do not get to the station more upstream (N2).

The juveniles seem to prefer lower salinities than adults (Marques, 1982).

They swim upstream were the competition is lower and the environment is more

favourable. The juveniles had their main distribution in stations M and N1,

although when extreme weather events occur this distribution changed and

juveniles appear in other stations, such as N2 (July 2005). This can be

explained by the fact that when these events occur, the stations M and N1 are

overpopulated by adult males and females, so juveniles migrate upstream,

where they find better conditions (i.e. food availability, shelter, low predation),

although the percentage on the most upstream station (N2) of juveniles is not

too big. Around 10% of juveniles per year, except in 2004/2005 and in

2008/2009 when the percentage were higher on the station N2 (47% and 20%,

! 33!

respectively), having this higher percentages just when the conditions are

favourable, in this case droughts.

The females are more sensitive to the temperature and salinity preferring

high salinity when the temperature is lower and lower salinity when the

temperature is high (Broekema, 1942). So, when temperature was lower the

density on the station M was higher and when the temperature was higher they

moved to the station S2.

Considering the berried females, salinity is the main factor affecting its

distribution. July of 2005 was the month when highest numbers of berried

females were present in the estuary. This was due to the preference of berried

females for high salinity and after these extreme weather events, the salinity in

estuary increased. This pattern was also found in August, 2003, June 2006,

March 2007, September 2009 and July 2010, all months when extreme weather

events occurred, increasing the salinity in the estuary.

4.4. Parameters that influence the C. crangon. Reproduction, settlement

and recruitment

From the GLM analysis, SST, NAO, river runoff and the north-south wind

component were the parameters (predictors) that significantly influenced the

inter-annual peak abundance patterns of juvenile populations. Other

environmental parameters that may influence this species’ abundance, such as

salinity or dissolved oxygen were not considered significant. Taking into account

the species’ biology, which include the migration of newly hatched larvae from

coastal areas to estuaries, three distinct scenarios were evaluated: the direct

response to the environmental parameters, and with a time lag of one and two

! 34!

months between the environmental parameters and the observed densities of

juveniles and the total population.

SST was one of the most important predictors explaining the catches of

C. crangon juveniles, when considering a time lag of one and two months.

Although the total percentage explained was somewhat low, a general trend

could be observed, in which higher SST values corresponded to higher

densities. In fact, temperature is an important factor to the settlement of

juveniles, and it seems that 25ºC is the optimal temperature to their growth

(high limit is about 30ºC) (Freitas et al., 2007; Campos & Van der Veer, 2008).

The temperature has an important role on the life cycle of the C.

Crangon: in his growth (Tiews 1954), incubation eggs period (Boddeke &

Becker, 1979), time to sexually maturity (Meredith 1952), the timing of

immigration and settlement of shrimp larvae (Beukema 1992) and also affects

the salinity tolerance.

The NAO is a large-scale oceanographic process that influences the

general climate patterns over the North Atlantic Ocean, North America and

Europe, such as wind speed and direction, air temperature, sea surface

temperature and rainfall (Hurrel et al., 2003). The negative phase of the NAO

generally induces wet weather in southern Europe and dry weather in northern

Europe, while a positive phase induces an opposite pattern. In addition, the

NAO has been correlated with a range of ecological processes, such as fish

stocks and landings (Attrill & Power, 2002; Teixeira et al., 2009). On the

Portuguese coast, the NAO has been determined to influence not only the sea

surface temperature (SST), but also the wind and current patterns (Henriques et

! 35!

al., 2007), which can have a synergistic effect on the factors that interact

directly with recruitment variability.

In the present work, the NAO significantly influenced the catches of

juveniles with a time lag of two months, with the negative phase being related to

higher juvenile densities. Considering the influence of the NAO on the

environmental conditions described previously, the spawning and recruitment

processes on the coastal area may have been influenced up to some degree. A

similar pattern has been observed in the Thames estuary (United Kingdon) by

Attrill and Power (2002), in which the NAO significantly influenced the

abundance of C. crangon over a 16-year period.

Coastal wind speed and direction, particularly the north-south

component, was also significant in explaining the abundance trends of juveniles

and the whole population, measured in the corresponding month. The negative

values of the north-south wind (which component correspond to northerly

winds), the dominant winds in the Portuguese coast, are usually responsible for

coastal upwelling, inducing also Ekman transport of the surface water away

from the coast (Huthnance, 1995; Smyth et al., 2001; Mason et al., 2005). In

this case, the wind blows parallel to the coast, which tends to drive the ocean

surface currents to the right of the wind direction, pushing surface waters

offshore. As surface waters are pushed offshore, water is drawn from below to

replace them. The upward movement of this deep, colder water is called

upwelling, creating a potential barrier to the migration of shrimps into estuarine

waters. In agreement, in the present work, juvenile and the whole population

higher densities were observed when wind values were close to zero, reducing

! 36!

the possibility of turbulence and advection that can constrain their transport to

the estuary.

The transport processes of C. crangon larvae towards estuaries are still

uncertain. On one hand, some authors stated that larvae are transported

passively, being swirled up in the water column by increasing tidal because of

wind induced currents and sinking down at low current velocities (Rijnsdorp et

al., 1985; Bergman et al., 1989). On the other hand, it has been pointed out that

larvae are also able to control somehow their transport selectively, by swimming

up from the seabed during flood tides and remaining on the seabed during ebb

tides (i.e. selective tidal transport) as observed in flatfish species (Rijnsdorp et

al., 1985; Jager, 1999). Nevertheless, the process of estuarine colonization by

shrimp larvae seems to be influenced by the prevailing weather conditions such

as wind, currents and tides.

The abundance trends of juveniles were also influenced by river runoff.

River runoff was highly variable during the surveyed period, resulting in a series

of drought and non-droughts scenarios. They had responded positively to

higher river runoff, which on one hand might be related with the extension of

river plumes in the coastal areas, which is as observed for several fish species

(e.g. Vinagre et al., 2007; Martinho et al., 2009). On the other hand, juveniles

are more tolerant to lower salinity levels. This means that when the runoff is

high the salinity drops, making the adult population migrate therefore leaving

more space, food availability and reducing the cannibalism (Marchand, 1981),

increasing the density of juveniles.

! 37!

Overall, climate patterns seemed to influence, up to some degree, the

abundance trends of C. crangon over the study period. Since estuaries act as a

nursery area for this species, as well as for several other invertebrates and fish,

they have a potentially critical role in dampening climate-induced stock

fluctuations, as observed by Attrill & Power (2002). Thus, monitoring and

protection measures should be directed towards estuaries, in order to preserve

and enhance their capability of replenishing the coastal (and estuarine) stocks

of commercially exploited estuarine-dependent species.

! 38!

Chapter 5

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! 39!

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