m. extorquens dsm13060...um s p. 2m f c o l 3. 1 a groba ct erium t umefa c iens str . c58 plasmid...

1
0.5 Methylobacterium extorquens DSM 13060 Agrobacterium tumefaciens str. C58 plasmid AT Agrobacterium sp. 10MFCol1.1 4 A D S U m u c i n o p a j m u i b o z i h r y d a r B Rhizobium leguminosarum bv. phaseoli 4292 1 4 H 4 i t o l i l e m m u i b o z i h r o n i S 3 2 A F i l o e s a h p v b m u r a s o n i m u g e l m u i b o z i h R Agrobacterium rhizogenes plasmid pRi1724 Ancylobacter sp. FA202 6 5 4 6 1 M S D s n e c s e b l a x e r e t c a b o t o i s e N 5 1 1 C s u c i d n i r o t c u d e r i t a r t i N Mesorhizobium sp. BNC1 plasmid 2 0 9 6 3 5 C C T A s i l e f s i l e f a i p i f A Agrobacterium sp. str. 224MFTsu3.1 Sinorhizobium meliloti WSM4191 Roseomonas cervicalis ATCC 49957 4 4 8 1 A D S U e s n e l o g n o m m u i b o z i h R Agrobacterium vitis S4 plasmid pAtS4a Rhizobium sullae WSM1592 Sinorhizobium meliloti AK83 plasmid pSINME01 d l o f f a c s c i m o n e g 0 3 8 4 1 2 1 4 5 6 0 1 1 f c s 2 6 0 E J . p s o i r b i v o d u e s P Rhizobium sp. CF142 Gluconobacter oxydans 621H plasmid pGOX1 Methylobacterium nodulans ORS 2060 Sinorhizobium meliloti MVII-I 1 Rhizobium giardinii bv giardinii H152T Methylobacterium chloromethanicum CM4 plasmid pMCHL01 d 2 4 p d i m s a l p c i t o i b m y s i l t e m u i b o z i h R Acetobacteraceae bacterium AT-5844 Rhizobium m u r a s o n i m u g e l bv. trifolii WSM1325 plasmid pR132503 Rhizobium sp. Pop5 Nitrobacter hamburgensis X14 plasmid 2 Alpha proteobacterium sp. JGI 001015-K04 contamination screened Rhizobium sp. NGR234 plasmid pNGR234a Rhodobacteraceae bacterium KLH11 scf 1108856220444 genomic scaffold Sinorhizobium meliloti 1021 plasmid pSymB Rhodobacter sphaeroides 2.4.1 Agrobacterium sp. ATCC 31749 AGT45 2 1 5 F A P N C i l t e m u i b o z i h R Mesorhizobium sp. BNC1 d i m s a l p 1 Agrobacterium tumefaciens 5A Rhizobium etli CFN 42 plasmid p42a 2 7 1 M S W e a g n a r e t m u i b o z i h r o n i S 1 Rhizobium etli CFN 42 plasmid p42c Sinorhizobium medicae WSM244 7 1 7 9 4 C C T A e a e m o o r b a i p i f A Agrobacterium sp. H13-3 chromosome Oceanicola granulosus HTCC2516 unfinished sequence Methylobacterium sp. 285MFTsu5.1 Rhizobium leguminosarum bv viciae UPM1131 Rhizobium tropici CIAT899 Rhizobium sp. CF080 Rhizobium leguminosarum bv viciae Vh3 Rhizobium sp. NGR234 plasmid pNGR234b Rhizobium lupini HPCL 5 5 3 M S W . p s a g r i v o r c i M 7 Methylobacterium nodulans ORS 2060 plasmid pMNOD01 Rhodobacter sp. AKP1 Rhizobium tropici USDA 9039 Methylobacterium nodulans ORS 2060 plasmid pMNOD02 Rhizobium leguminosarum bv trifolii WSM2012 Rhizobium sp. 2MFCol3.1 Agrobacterium tumefaciens str. C58 plasmid Ti Paracoccus sp. TRP Paracoccus TRP Contig 21 Mesorhizobium sp. WSM3224 Xanthobacter autotrophicus Py2 plasmid pXAUT01 Methylobacterium extorquens DM4 Methylobacterium extorquens AM1 megaplasmid Sinorhizobium meliloti BL225C ctg00022 Ochrobactrum intermedium J2 Rhizobium leguminosarum bv. trifolii CB782 Rhodobacterales bacterium HTCC2150 unfinished sequence Rhizobium etli CIAT 894 unfinished sequence 0 1 5 E G C C m u r a s o n i m u g e l m u i b o z i h R Mesorhizobium sp. WSM3626 Agrobacterium radiobacter K84 plasmid pAtK84b 1 8 4 1 M S W e a i c i v v b m u r a s o n i m u g e l m u i b o z i h R p s 2 0 6 R m u c i l l a g v b m u c i l l a g m u i b o z i h R Methylobacterium sp. 4-46 5 1 I - 4 1 0 1 0 0 I G J . p s m u i b o z i h R Aurantimonas ureilytica DSM 18598 Agrobacterium vitis S4 plasmid pAtS4e Sagittula stellata E-37 unfinished sequence Ensifer fredii USDA257 Mesorhizobium loti USDA 3471 Rhizobium leguminosarum bv viciae VF39 2 Mesorhizobium sp. WSM4349 Rhizobium leguminosarum bv viciae 128C53 2 4 2 9 4 C C T A l l e w k c o R . p s s i t s y c o l y h t e M Rhizobium sp. CF122 Sinorhizobium sp. TW10 Pelagibaca bermudensis HTCC2601 1100011001307 Rhizobium sp. STM6155 Agrobacterium tumefaciens str. C58 chromosome linear Sinorhizobium medicae WSM1115 Rhizobium sp. OR 191 Mesorhizobium loti MAFF303099 plasmid pMLa Ensifer meliloti GR4 Agrobacterium vitis S4 plasmid pTiS4 Mesorhizobium ciceri biovar biserrulae WSM1271 plasmid pMESCI01 2 m u c i n o p a j m u i b o z i h r y d a r B 2 Dinoroseobacter shibae DFL-12 Rhodobacter sphaeroides 2.4.1 plasmid D Rhizobium etli IE4771 unfinished sequence Sinorhizobium meliloti CCNWSX0020 Agrobacterium sp. ATCC 31749 AGT68 Rhizobium leguminosarum bv. trifolii WSM597 Methylocapsa acidiphila B2 Mesorhizobium amorphae CCNWGS0123 9 5 2 3 A D S U i i n a k l e m u i b o z i h r y d a r B 5 3 1 A D S U m u c i n o p a j m u i b o z i h r y d a r B Rhizobium leguminosarum bv viciae Ps8 Agrobacterium tumefaciens F2 Agrobacterium sp. 719 389 Sinorhizobium medicae WSM1369 Methylobacterium extorquens DM4 plasmid p1METDI Microvirga sp. Lut6 Methylobacterium sp. WSM2598 Rhizobium mesoamericanum STM3625 Sinorhizobium medicae Di28 Agrobacterium vitis S4 plasmid pAtS4c Methylosinus sp. LW4 Mesorhizobium alhagi CCNWXJ12-2 Bradyrhizobium sp. BTAi1 plasmid pBBta01 Bradyrhizobium japonicum USDA 123 Pseudovibrio sp. FO-BEG1 Methylocystis rosea SV97T Rhizobium leguminosarum bv. trifolii CC283b 3 5 2 1 M S W . p s m u i b o z i h r y d a r B Rhizobium leguminosarum bv viciae GB30 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01 21 48 41 97 77 68 43 100 97 99 95 67 59 82 97 64 77 100 51 100 32 91 33 61 29 85 24 62 100 100 100 67 100 100 100 37 100 100 100 100 100 100 62 100 100 98 100 99 81 100 15 73 32 91 96 66 78 93 80 100 48 75 100 98 M. extorquens AM1 M. extorquens DSM13060 A B

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Page 1: M. extorquens DSM13060...um s p. 2M F C o l 3. 1 A groba ct erium t umefa c iens str . C58 plasmid Ti P aracoc c u s s p. T R P ara c oc c u s T R P Co n t i g 2 1 M e s o r h i z

0.5

Methylobacterium extorquens DSM 13060

Agrob

acter

ium tu

mefacie

ns st

r. C58

plas

mid AT

Agro

bact

eriu

m s

p. 1

0MFC

ol1.

1

4 ADS

U mucinopaj

muibozihrydarB

Rhi

zobi

um le

gum

inos

arum

bv.

pha

seol

i 429

214H4 itolilem

muibozihroniS

32AF

iloe

sahp

vb

mura

soni

muge

l mu

iboz

ihR

Agrobacterium rhizogenes plasm

id pRi1724

Ancy

loba

cter

sp.

FA2

02

65461 MS

D snecseblaxe retcabotoiseN

511C

suci

dni r

otcu

derit

artiN

Mesorhizobium sp. BNC1 plasmid 2

0963

5 C

CTA

silef

silef

aipif

A

Agro

bact

eriu

m s

p. s

tr. 2

24M

FTsu

3.1

Sinorhizobium meliloti WSM4191

Roseomonas cervicalis ATCC 49957

4481 ADS

U esnelognom

muibozihR

Agro

bact

eriu

m v

itis

S4 p

lasm

id p

AtS4

a

Rhiz

obiu

m s

ulla

e W

SM15

92

Sinorhizobium meliloti AK83 plasmid pSINME01

dloffacs cimoneg 0384121456011 fcs 260EJ .ps oirbivoduesP

Rhizobium sp. CF142

Gluco

noba

cter

oxy

dans

621

H pla

smid

pGOX1

Methylobacterium nodulans ORS 2060

Sinorhizobium meliloti MVII-I 1

Rhizobium giardinii bv giardinii H152T

Methylobacterium chloromethanicum CM4 plasmid pMCHL01

d24p

di

msal

p cit

oib

mys i

lte

muib

ozih

R

Acet

obac

tera

ceae

bac

teriu

m A

T-58

44

Rhi

zobi

um

murasonimugel

bv.

trifo

lii W

SM13

25 p

lasm

id p

R13

2503

Rhizobium sp. Pop5

Nitrobacter hamburgensis X14 plasm

id 2Alpha proteobacterium sp. JGI 001015-K04 contamination screened

Rhizobium sp

. NGR234 plasm

id pNGR234a

Rhodobacteraceae bacterium KLH11 scf 1108856220444 genomic scaffold

Sinorhizobium meliloti 1021 plasmid pSymB

Rhodobacter sphaeroides 2.4.1

Agrob

acter

ium sp

. ATC

C 3174

9 AGT4

5

215F

APN

C ilt

e mu

iboz

ihR

Mes

orhi

zobi

um s

p. B

NC

1 di

msalp 1

Agrobacte

rium tu

mefaciens 5

A

Rhizob

ium e

tli CFN

42

plasm

id p4

2a

271

MSW

eagn

aret

muib

ozih

roni

S

1Rhizobium etli CFN 42 plasmid p42c

Sinorhizobium medicae WSM244

7179

4 CC

TA e

aemo

orb

aipif

A

Agro

bact

eriu

m s

p. H

13-3

chr

omos

ome

Oceanicola granulosus HTCC2516 unfinished sequence

Methylobacterium sp. 285MFTsu5.1

Rhizobium leguminosarum bv viciae UPM1131

Rhizobium

tropici CIAT899

Rhiz

obiu

m s

p. C

F080

Rhizobium leguminosarum bv viciae Vh3

Rhizobium sp. NGR234 plasmid pNGR234b

Rhiz

obiu

m lu

pini

HPC

L

553MSW .ps agrivorciM

7

Methylo

bacter

ium nodulans O

RS 2060

plasmid pMNOD01

Rhodobacter s

p. AKP1

Rhizobium tropici USDA 9039

Methylobacterium nodulans ORS 2060 plasmid pMNOD02

Rhiz

obiu

m le

gum

inos

arum

bv

trifo

lii W

SM20

12

Rhizobium sp. 2M

FCol3.1

Agrobacterium tumefaciens str. C58 plasmid Ti

Paracoccus sp. TRP Paracoccus TRP Contig 21

Mesorhizobium sp. WSM3224

Xanthobacter autotrophicus Py2 plasmid pXAUT01

Methylobacterium extorquens DM4

Methylobacterium extorquens AM1 megaplasmid

Sinorhizobium meliloti BL225C ctg00022

Ochrobactr

um interm

edium J2

Rhizobium leguminosarum bv. trifolii CB782

Rhodobacterales bacterium HTCC2150 unfinished sequence

Rhizobium etli CIAT 894 unfinished sequence

015 EG

CC

murasonimugel

muibozihR

Mesor

hizob

ium sp

. WSM36

26

Agrobacterium radiobacter K84 plasmid pAtK84b

1841MS

W eaiciv vb murasoni

mugel muibozih

Rps

206

R mu

cilla

g vb

mu

cilla

g mu

iboz

ihR

Methylobacterium sp. 4-46

51I-410100 I

GJ .ps muibozih

R

Aurantimonas ureilytica DSM 18598

Agrobacterium vitis S4 plasm

id pAtS4e

Sagittula stellata E-37 unfinished sequence

Ensifer fredii USDA257

Mesor

hizob

ium lo

ti USDA 34

71

Rhizobium leguminosarum bv viciae VF39 2

Mesorhizobium sp. WSM4349

Rhizobium leguminosarum bv viciae 128C53

2429

4 CC

TA ll

ewkc

oR .

ps s

itsy

coly

hte

M

Rhizobium sp. CF122

Sinorhizobium sp. TW10

Pelagibaca bermudensis HTCC2601 1100011001307

Rhizobium sp. STM6155

Agro

bact

eriu

m tu

mef

acie

ns s

tr. C

58 c

hrom

osom

e lin

ear

Sinorhizobium medicae WSM1115

Rhizobium sp. OR 191

Mesorhizo

bium loti M

AFF303099 plasmid pMLa

Ensifer meliloti GR4

Agrob

acte

rium vi

tis S

4 pla

smid

pTiS

4

Mesor

hizob

ium ci

ceri

biova

r bise

rrulae

WSM12

71 pl

asmid

pMESCI01

2 mu

cino

paj

muib

ozih

ryda

rB

2Dinoroseobacter shibae DFL-12

Rhodobacter sphaeroides 2.4.1 plasmid D

Rhizobium etli IE4771 unfinished sequence

Sinorhizobium meliloti CCNWSX0020

Agro

bact

eriu

m s

p. A

TCC

317

49 A

GT6

8

Rhizobium leguminosarum bv. trifolii WSM597

Methylocapsa acidiphila B2

Mesor

hizob

ium a

morph

ae C

CNWGS0

123

9523

ADS

U iin

akle

mu

iboz

ihry

darB

531 ADS

U mucinopaj

muibozihrydarB

Rhizobium leguminosarum bv viciae Ps8

Agrobacterium tumefaciens F2

Agro

bact

eriu

m s

p. 7

19 3

89

Sinorhizobium m

edicae W

SM1369

Methylobacterium extorquens DM4 plasmid p1METDIM

icrovirga sp. Lut6

Methylobacterium sp. WSM2598

Rhizobium

mesoam

ericanum STM

3625Sinorhizobium medicae Di28

Agrobacterium vitis S4 plasmid pAtS4c

Methylosinus sp. LW

4

Mesorhizobium

alhagi CCNWXJ12-2

Bradyrhizobium sp. BTAi1 plasm

id pBBta01

Bradyrhizobium japonicum

USDA 123

Pseu

dovi

brio

sp.

FO

-BEG

1

Methylocystis rosea SV97T

Rhizobium

leguminosarum

bv. trifolii CC

283b

3521

MSW .

ps

muib

ozih

ryda

rBR

hizo

bium

legu

min

osar

um b

v vi

ciae

GB3

0

Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01

21

4 8

4197

7 7

68

43

100

97

9 9

95

67

59

8 2

97

64

7 7100

51

100

3 2

91

3 3

61

29

85

2 4

6 2

100

100

100

67

100

100

100

37

100

100

100

100

100 100

6 2

100

100

98

100

9 9

81

100

1 5

7 3

32

91

96

66

78

9 3

80

100

48

7 5

100

98

M. extorquens AM1

M. extorquens DSM13060

A

B